FMO13959.5prime Sequence
1098 bp (960 high quality bases) assembled on 2014-01-10
> FMO13959.5prime
TCAGTCGACATGTCCTTCACCGGTCCAATCCTAATATGCCTGATCATGGG
AGCCATTACCCATGCAAATTCGCACGAGCATGCCGATGGCTTTAAGCCAG
ATGGTGAAATCCTGCGCGTTCTGGTGAACAGCTCGGCACAAATCAAATGC
GATGTGGGCTCCAGCCAGGCCGATGACAAAGTGCTTCTGGTTGTTTGGTA
CAAGAATAATTTACCCATTTACAGCTACGACACACGTGGCGCCCACGCTG
GCACCCCATCCCATTGGCGTGACGAGGAGGTCCTTGAAGATCGGGCCGTA
TTTCGAACGCACAAGGAGCCGGCGGAATTGATTATAAATCCGGTTAAGGA
AAAGGATGCGGGCAACTTTCGGTGTCGCGTGGACTTCAAGCTTTCGCAGA
CCCGCAACAGCAATGTCAATTTGGAGGTTGTCGTGCCGCCAACGCAGCCG
ATTATCTTCAATGAACGCCGCCTGCGAATCGATTCGAGAGCAGGTCCTTA
TGAAGAAGGTGGCAGCCTGGAAGTCACCTGCGTTGTTTACGGAGGCTCTC
CGCCGCCGACAGTCATTTGGCTGATGAATGGGCAGCTGCAGAACAGCGTT
GTCGATTACACATACGATGGCGCCATCAACAGCAAGCTGGTGGTACGCAA
CCTGTCAAGAATCCACCAGCATGCGGTCTACACCTGCCAGGCCAGCAATT
TCCACAAGAAATATGTGGCCACCAACATAACGATCGACCTATACCTGCGC
CCTCTGTTGGTGGAAATTTGCTTCAATAATCAGCCGATGTCAGCGGATCG
AAAGTATGAGATCGAGTGCCAGCGATCGGATCGAGGCCACCGGGCCAAAA
TCACCTGATGGATGGGCATCTCGAGCTGCATGGCCATAGCCAGAAGTTTC
GGAGGATGGCAATGTCAGCACATCGGTGCTCTCGATCACACCCACAAGAA
GAAGGACATGGCAAGGCTTTATCTGCAAGGCACAATGAACTTCGTTCGAA
ATGGCATTCGAAACCGGCCATGGAGGTTGATGTGTTCTTCATTTCCACCT
TGCGAGCTGGAACTAGGGCTCTATTGGAATCCGGAAGAATTTACAGAG
FMO13959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34114-RC | 4318 | CG34114-RC | 1579..2658 | 9..1085 | 4855 | 97.4 | Plus |
| CG34114-RB | 6818 | CG34114-RB | 1579..2658 | 9..1085 | 4855 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11019666..11019868 | 543..745 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 11012217..11012345 | 221..349 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 11012011..11012137 | 98..224 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 11023468..11023619 | 746..896 | 570 | 96.1 | Plus |
| 3R | 32079331 | 3R | 11013317..11013429 | 433..545 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 10993514..10993605 | 9..100 | 460 | 100 | Plus |
| 3R | 32079331 | 3R | 11012439..11012525 | 347..433 | 435 | 100 | Plus |
| 3R | 32079331 | 3R | 11023673..11023817 | 896..1038 | 335 | 89.8 | Plus |
Blast to na_te.dros performed 2014-11-29 00:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver2 | 4917 | diver2 DIVER2 4917bp | 1478..1606 | 978..844 | 110 | 57.8 | Minus |
FMO13959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:51 Download gff for
FMO13959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34114-RB | 1579..2643 | 9..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:46 Download gff for
FMO13959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34114-RB | 1579..2643 | 9..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:46 Download gff for
FMO13959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10993514..10993605 | 9..100 | 100 | -> | Plus |
| 3R | 11012014..11012137 | 101..224 | 100 | -> | Plus |
| 3R | 11012221..11012344 | 225..348 | 100 | -> | Plus |
| 3R | 11012441..11012525 | 349..433 | 100 | -> | Plus |
| 3R | 11013318..11013428 | 434..544 | 100 | -> | Plus |
| 3R | 11019668..11019868 | 545..745 | 100 | -> | Plus |
| 3R | 11023468..11023619 | 746..895 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:51 Download gff for
FMO13959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6838163..6838247 | 349..433 | 100 | -> | Plus |
| arm_3R | 6839040..6839150 | 434..544 | 100 | -> | Plus |
| arm_3R | 6849190..6849341 | 746..895 | 95 | -> | Plus |
| arm_3R | 6837736..6837859 | 101..224 | 100 | -> | Plus |
| arm_3R | 6837943..6838066 | 225..348 | 100 | -> | Plus |
| arm_3R | 6845390..6845590 | 545..745 | 100 | -> | Plus |
| arm_3R | 6819236..6819327 | 9..100 | 100 | -> | Plus |
