FMO13960.5prime Sequence
1043 bp (961 high quality bases) assembled on 2014-01-10
> FMO13960.5prime
TCAGTCGACATGGTCAAAACTGCCACCTTTTGGCGTTGCCTTTTCTTTAC
ATTATGTGGAAGCTTTTTGACGGTTACTCAGGCCAAAGCAACTAGCAACG
CAAGCAGTTTTTTGGAGGTGTCGCTGCGCTATTTTGATGAGCAGCTTCTG
CTGGACATCCTGCCACGCGCTCAGTGTCCTGGCGAGGATGAAGGATCTCC
GATGGACGAGTTCGCCGACCTGTTTACGGTGGATCAACTTCGCCAGGGAT
GGGTGGTGCTGCACGTCTTCGCTGCGGTTTACTTCTTTATCCTGCTGGCC
ATCATTTGCAACGACTACTTCCTGCCGACTGTGGAGTGCATCTGCGAGGA
CTTGCACCTTTCGAAGGACGTGGCAGCGGCCACTTTCATGGCTACCGCCA
CCTCCATGCCCGAATTCTTTACGAACACGATCAGCACGTTGATTCTGGAG
TCAGATATGGGCCTGGGCACGATTATCGGCTCGTTAATGTTCAACACATT
GGGAGTGGCCGGCCTAGCTGCGCTCGCCATCGATAAGCCGGTGCAACTGG
ACTGGTGGCCCATAGCTCGCGACTGCTTTATTTATGTCTTCAACACGATT
ATCCTGCTGGTCTTGGCCTGGAGTGGAAGCATTAGTTTCACTGAGTCCTG
CATCATGATGGGATTCCTCATCCTTTACTACCTTATCACGTTTAACAACA
ACAAGTTTATGCCCGCCATCCGGGTGTTTATCGAGGATCGTATGAACTGC
TGCTTCTCCACGCGATATGATCTAACGGAGCCTCCAGAGAACAGTGCCAA
GGCGCAGCTTCCACTCAAAAAGATCCTCTGTCCGGCGATGGCCTCTTTGT
TCTAATCTTCCCGAAAACACTCGTCCATGTCTTCCACCGCACTCACACGT
AACAAGCATCTTAACGACGAGGACGACGTCGCAGACGTGTGCCGGGAGCA
TATACGCTTACCGCGTGACGCATCGGTGGATGCATTCTGGTGAATCCTCG
CTCTCCCCATAAGTCACGCTATCCCTATTGATCCGGACCGATG
FMO13960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17167-RC | 2503 | CG17167-RC | 294..1336 | 6..1034 | 4770 | 98.1 | Plus |
| CG17167-RD | 2506 | CG17167-RD | 294..1339 | 6..1034 | 4730 | 97.8 | Plus |
| CG17167-RF | 2597 | CG17167-RF | 90..1051 | 87..1034 | 4380 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23074762..23075070 | 229..537 | 1545 | 100 | Plus |
| X | 23542271 | X | 23077856..23078089 | 536..769 | 1155 | 99.6 | Plus |
| X | 23542271 | X | 23073105..23073247 | 87..229 | 715 | 100 | Plus |
| X | 23542271 | X | 23078159..23078310 | 769..914 | 500 | 94.7 | Plus |
| X | 23542271 | X | 23068594..23068676 | 6..88 | 400 | 98.8 | Plus |
| X | 23542271 | X | 23078770..23078901 | 911..1034 | 225 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:02:04 has no hits.
FMO13960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:52 Download gff for
FMO13960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17167-RC | 289..1347 | 1..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:48 Download gff for
FMO13960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17167-RC | 289..1347 | 1..1043 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:48 Download gff for
FMO13960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23068589..23068676 | 1..88 | 95 | -> | Plus |
| X | 23073107..23073247 | 89..229 | 100 | -> | Plus |
| X | 23074763..23075070 | 230..537 | 100 | -> | Plus |
| X | 23077858..23078089 | 538..769 | 99 | -> | Plus |
| X | 23078160..23078306 | 770..910 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:52 Download gff for
FMO13960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 47407..47494 | 1..88 | 95 | -> | Plus |
| XHet | 51925..52065 | 89..229 | 100 | -> | Plus |
| XHet | 53581..53888 | 230..537 | 100 | -> | Plus |
| XHet | 56676..56907 | 538..769 | 99 | -> | Plus |
| XHet | 56978..57124 | 770..910 | 95 | -> | Plus |
