FMO13961.5prime Sequence
1025 bp (935 high quality bases) assembled on 2014-01-10
> FMO13961.5prime
TCAGTCGACATGAAAGCGACCAGGAACGGCGGCCAGCTGCTCATCGCTCC
TTCGCCGCAGACTGCTGCCCGTCTGCTGCCCCTGCGCACCTACTCCAACG
CCTCCTCGCTGGGCCACCACCATGACAGGAGCACCCTGTCCGACGGCGAC
GAGGAGGAGGGCGGCCTTGGCTACACCCACACGCTGATGTATGGTCGCTA
TACCAAAGATCTAGGAGAATTTGCCAAGGATGAAGCCAGAAAGCTCAAAA
TACTCGAAAAGCGACGAAAGCAGGAAGATAAGCAAAGGAATAAGGAACTG
CTGGGCAAACATTCGACCCGGGCGAAGCGGGTATCATCATGGATCTGGAG
GCACACGGTGGCCCGACTGGGCGAGGATTGGGTATTCCTGGCCCTACTGG
GCATCATTATGGCCCTGCTCTCGTTCATCATGGACAAGGGCATATCCATA
TGTACAAACGCGCGAATTTGGCTGTATCGCGATCTGACGTCACAGCCTTT
TGTTCAGTACATCGCATGGGTCTCACTGCCGGTCTGTTTGATATTGTTCT
CAGCCGGCTTTGTCCATCTCATCGCACCGCAAAGTATAGGTTCTGGTATA
CCCGAAATGAAGACCATACTGCGCGGCGTTCAATTGAAAGAGTATCTCAC
ATTTAAGACACTAGTGGCCAAGGTAATTGGTTTAACGGCAACTCTGGGCA
GCGGTATGCCATTAGGAAAGGAAGGTCCTTTCGTACATATAGCAAGTATT
GTAGCACAATTATTAAGTAAACTTGTCACATCATTCCCAAGGCATATATG
AAGATTGAGTCGCGAAACTCTGAAATGTTGGCGGCAGCCTGTGCTGTCGG
TGTGGGCGCCTGTTTTGCGCTCCAGTCAGTGGTGTGCTCTTCAGCATAAG
AGGTCACCACCCACGTACTTCGCTGGTGCGTAACTACTTGACGCGGAATT
CTTTGCGGCTGGAGTGCGGCGGCCCACTGTTCTTTCAGCTCCTGGGTCGT
TTGGTTTCTAAACGCGGAAACCCCT
FMO13961.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-a-RH | 4444 | CG31116-RH | 809..1810 | 10..1022 | 4620 | 97.8 | Plus |
| ClC-a-RG | 4031 | CG31116-RG | 777..1778 | 10..1022 | 4620 | 97.8 | Plus |
| ClC-a-RI | 4082 | CG31116-RI | 809..1829 | 10..1022 | 4420 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11810364..11810540 | 186..10 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 11802170..11802337 | 460..293 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 11801159..11801296 | 724..587 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 11801950..11802081 | 591..460 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 11800870..11801028 | 883..724 | 625 | 96.9 | Minus |
| 3R | 32079331 | 3R | 11802583..11802696 | 295..182 | 555 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:02:36 has no hits.
FMO13961.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:11 Download gff for
FMO13961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-a-RG | 777..1743 | 10..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:08 Download gff for
FMO13961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-a-RG | 777..1743 | 10..986 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:08 Download gff for
FMO13961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11810364..11810540 | 10..186 | 100 | | Minus |
| 3R | 11802170..11802335 | 295..460 | 100 | <- | Minus |
| 3R | 11802584..11802691 | 187..294 | 100 | <- | Minus |
| 3R | 11800872..11801028 | 724..881 | 96 | <- | Minus |
| 3R | 11801160..11801293 | 590..723 | 100 | <- | Minus |
| 3R | 11801952..11802080 | 461..589 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:11 Download gff for
FMO13961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7627892..7628057 | 295..460 | 100 | <- | Minus |
| arm_3R | 7628306..7628413 | 187..294 | 100 | <- | Minus |
| arm_3R | 7636086..7636262 | 10..186 | 100 | | Minus |
| arm_3R | 7626594..7626750 | 724..881 | 96 | <- | Minus |
| arm_3R | 7626882..7627015 | 590..723 | 100 | <- | Minus |
| arm_3R | 7627674..7627802 | 461..589 | 100 | <- | Minus |
