FMO13966.5prime Sequence
1046 bp (940 high quality bases) assembled on 2014-01-10
> FMO13966.5prime
TCAGTCGACATGCAGCGACGAGAACGGCAAGCAAGTGGCGGTGGCCCACA
AACGACAACTGCCGGTCCATCCGCTGGTAATGTGGCAAATGCCACCACAG
CCCTAGCCGGTGGTAAAAGCTCAAGCAATAACATGTATTCCACCCGCCAA
TCTGTAAGCACCACGACCGGTGTACTTATGGTCGGACCAAATTTTCGTGT
CGGTAAAAAAATTGGCTGTGGTAATTTTGGCGAATTGCGTTTAGGCAAAA
ACCTTTACAACAATGAACATGTAGCAATAAAAATGGAGCCTATGAAGTCA
AAGGCTCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATC
ACATGCCGATAACGCCCCAGATGGCATACCACGCATTTATCATTTGGGCA
CTTGCGGTGGCCGTTACAATGCCATGGTTTTAGAGTTATTGGGATTATCA
TTAGAAGATCTCTTCAATATTTGCGCCCGTAAATTTTCACTTAAGACTGT
ATTGATGATAGCGAAACAACTTCTCCACCGGATCGAATATGTTCATAGTC
GGCACTTAATATATAGGGATGTGAAACCAGAGAACTTTCTCATTGGCAGA
ACGTCAACAAAACGTGAAAAAATTATACATATAATTGATTTCGGTTTGGC
CAAAGAATACATTGATTTAGATACAAATAGGCATATACCATATCGGGAGC
ATAAATCCCTAACTGGAACGGCACGTTATATGTCAATCAACACGCACATG
GGGCGTGAGCAGTCGCGACGCGATGATCTGGAGGCATTGGGGCATATGTT
TATGTATTTCTTAACGGGTTCACTGCCGTGCAAGGCCTAAAGCTGATACA
CTCAAGGAGAGATATCAAAAATCGTGATACGAAACGAGCACGCCCATCGA
GTGCTTTGTGATGACATCAGAGAGTTTGCGACTATTTGCGTATGACGCGT
AGATTTTTTCGAACTCCCGACTATGAATTTCTGCGAGACTGTTCAGGACT
TTATTCGATCGTAGGGATACCCGACAGGGCGTTCAACTGATCGGAG
FMO13966.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-RM | 5623 | CG6963-RM | 1319..2364 | 6..1031 | 4630 | 97.4 | Plus |
| gish-RL | 2945 | CG6963-RL | 1037..2082 | 6..1031 | 4630 | 97.4 | Plus |
| gish-RH | 3149 | CG6963-RH | 1241..2286 | 6..1031 | 4630 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16296835..16297104 | 637..901 | 1090 | 97 | Plus |
| 3R | 32079331 | 3R | 16289629..16289840 | 34..245 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 16293986..16294153 | 355..522 | 840 | 100 | Plus |
| 3R | 32079331 | 3R | 16296662..16296776 | 523..637 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 16292722..16292834 | 243..355 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:02:50 has no hits.
FMO13966.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:19 Download gff for
FMO13966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RH | 1237..2286 | 1..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:17 Download gff for
FMO13966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RH | 1237..2286 | 1..1031 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:17 Download gff for
FMO13966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16296836..16297104 | 638..900 | 97 | -> | Plus |
| 3R | 16296662..16296776 | 523..637 | 100 | -> | Plus |
| 3R | 16275136..16275169 | 1..35 | 91 | -> | Plus |
| 3R | 16289631..16289839 | 36..244 | 100 | -> | Plus |
| 3R | 16292724..16292834 | 245..355 | 100 | -> | Plus |
| 3R | 16293987..16294153 | 356..522 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:19 Download gff for
FMO13966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12122384..12122498 | 523..637 | 100 | -> | Plus |
| arm_3R | 12122558..12122826 | 638..900 | 97 | -> | Plus |
| arm_3R | 12100858..12100891 | 1..35 | 91 | -> | Plus |
| arm_3R | 12115353..12115561 | 36..244 | 100 | -> | Plus |
| arm_3R | 12118446..12118556 | 245..355 | 100 | -> | Plus |
| arm_3R | 12119709..12119875 | 356..522 | 100 | -> | Plus |
