FMO13967.5prime Sequence
960 bp (954 high quality bases) assembled on 2014-01-10
> FMO13967.5prime
TCAGTCGACATGGTGTTGGCGGAGCGCAACACCACGGATGTGGTGCGCAA
CGGGCGCCGTTCGCGCGGCCCCAGTCCCAATACGCACACCACGGGCGGCG
TCACCAACAGCGCCAGCCTCGTGGGCAGCGGCAACAACAGCGGCCACTCC
GGGAACGCCAATGCGAACGAGAAGACCACCACAGCTGTGCCAGGTGCAGG
CACGCCGGAGAGCTCCGACGACGACAACTCCACCAAACGGAACGGCAAGA
GCAAGGCCAAGCAGTCTGAGTACGAAGAGAAAATCCGCGTTGGACGCGAC
TACCAGGCGGTTTGTCCGCCGCTCGTTCCGGAAGCGGAGCGCCGCCCGGA
ACAAATGAACGAACGCGCCCTCCTCGTATGGTCGCCCACCAAGGAGATTC
CTGATCTGAAATTGGAGGAGTACATTTCGGTGGCCAAGGAAAAGTACGGC
TACAACGGCGAACAGGCATTGGGCATGCTGTTCTGGCACAAACACGATCT
GGAGCGTGCCGTAATGGACCTGGCCAACTTCACGCCCTTCCCGGACGAGT
GGACCATCGAGGACAAGGTGCTGTTCGAACAGGCCTTCCAGTTCCACGGG
AAGAGCTTCCACCGCATCCGCCAGATGCTGCCAGACAAATCCATAGCCAG
TTTGGTCAAGTACTACTACTCGTGGAAGAAGACGCGTCACCGCAGCAGCG
CCATGGATCGCCAAGAAAAGGCCATCAGGCGGTGGTCAAGGATGGCTCCG
AGAACGGCAGCGAGGTGGGCAGCAACGAGGAGTCTGATAACGATGACAAG
AAAGGGCATGGCCACAAATAGCCCTCATAAATACCATCGACGCCACCACG
ACCTCTACCTACAACAGCACCACCAACTCCAACACCACCACCCCTGCTAA
TATCTTTGCCCACACGAATCAACAGAACCATAGCAGCAGCACAGCGGCGG
CGGTGCCACA
FMO13967.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoRest-RI | 3255 | CG42687-RI | 565..1510 | 10..955 | 4505 | 98.7 | Plus |
| CoRest-RH | 3155 | CG42687-RH | 465..1410 | 10..955 | 4505 | 98.7 | Plus |
| CoRest-RG | 3998 | CG42687-RG | 385..1330 | 10..955 | 4505 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19523096..19523315 | 10..229 | 1100 | 100 | Plus |
| X | 23542271 | X | 19523715..19523929 | 413..627 | 1075 | 100 | Plus |
| X | 23542271 | X | 19523989..19524163 | 627..800 | 825 | 99.4 | Plus |
| X | 23542271 | X | 19523493..19523629 | 276..412 | 685 | 100 | Plus |
| X | 23542271 | X | 19526839..19526994 | 799..955 | 455 | 93.1 | Plus |
| X | 23542271 | X | 19523387..19523434 | 230..277 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-29 00:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6945 | 80..308 | 160 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6890 | 72..185 | 151 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6905 | 103..286 | 150 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6916 | 86..254 | 141 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..7018 | 86..259 | 124 | 57 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7416..7464 | 84..132 | 110 | 69.4 | Plus |
FMO13967.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:20 Download gff for
FMO13967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoRest-RG | 385..1333 | 10..959 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:19 Download gff for
FMO13967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoRest-RG | 385..1333 | 10..959 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:19 Download gff for
FMO13967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19523096..19523315 | 10..229 | 100 | -> | Plus |
| X | 19523387..19523434 | 230..277 | 100 | -> | Plus |
| X | 19523495..19523629 | 278..412 | 100 | -> | Plus |
| X | 19523715..19523929 | 413..627 | 100 | -> | Plus |
| X | 19523990..19524163 | 628..800 | 99 | -> | Plus |
| X | 19526841..19526997 | 801..959 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:20 Download gff for
FMO13967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19417129..19417348 | 10..229 | 100 | -> | Plus |
| arm_X | 19417420..19417467 | 230..277 | 100 | -> | Plus |
| arm_X | 19417528..19417662 | 278..412 | 100 | -> | Plus |
| arm_X | 19417748..19417962 | 413..627 | 100 | -> | Plus |
| arm_X | 19418023..19418196 | 628..800 | 99 | -> | Plus |
| arm_X | 19420874..19421030 | 801..959 | 91 | | Plus |
