FMO13968.5prime Sequence
1019 bp (917 high quality bases) assembled on 2014-01-10
> FMO13968.5prime
TCAGTCGACATGTCGTCAATTGAATCGCTGTCCATCCAGGGAATACGGAG
TTTCGGCACCTATGCCGACGATCTTCAGAGTATAAAGTTTTCCTCGCCGG
TTACCCTGATTCTGGGCGAGAACGGATGCGGAAAGACGACCGTGGTAGAG
TGTCTCAAGTACGCCTTGACCGGCGAGTGTCCGCCGGGCAGTGATCGGGG
CAAGAGTTTCGTCCATGACCCTAAGATCTTTGGGCTAAACGAGGTGCTAG
CGCAGATCAAGATGCAGGTGCGGGACAGGCGGGGTGCCCAAGTGTCCATC
TGCCGCACCATGAAGGTGTCCAAGAAGCGCAACAAAATGTCCTTTGAAAC
AATGGACTCCACCATCAACTTCCTGACCGGCGCTGGACAGTCGAAGCGCG
AAAAGCAGGACTCGCTAAGCGGCCGCTCCGTGGATATCGACGTGGCCATC
TCGGACTTCATGGGTGTCTCCAAGGCTATTATCAACAATGTCCTGTTTTG
CCATCAAGAGGACTCCAGTTGGCCGCTGGACGAATCAAAAAAGTTAAAGG
AAAAGTTCGATGCCATATTCGGCATCACCGAGTACAATAAGGCGCTGGAT
AAAATCATAAAGCTTCGCAAGGAGGCTATGGAAGAGCTAAAAATAAAGGA
GGCCAACATAAAGCATGTGGCCTACCTCAAGCAGGAAATGGAGGTTAAAA
CTTTGAACCTACAAAGGCGCAGAGGAAATGCGACGCAATTACGCGCAGTG
CAGTGAGTGCGAGGAGGAAATGAAGCCGATTGAGCCAGGCTGGTGAAATC
CGAAATGTAGAGTTCGAAATTGGAAGTATCAAGCGCAGAAGTCGAAATGA
CACAAGCACAAAACTGCATGATCAGATATCCACTCTAACCTGAGATCAGA
TCCCTTTAAGGTACCCTGATGATGATCAGAGATAGTACTTGATCAGCGCT
GCTAAGATGCGTCGAATCGACGATGGAAGGGGAATTTGTCCCAAATAAAG
TCAGTGCTGAACAGAAGTC
FMO13968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rad50-RE | 4068 | CG6339-RE | 83..1065 | 6..963 | 4240 | 97 | Plus |
| rad50-RD | 4068 | CG6339-RD | 83..1065 | 6..963 | 4240 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22421095..22421738 | 6..649 | 3205 | 99.8 | Plus |
| 2R | 25286936 | 2R | 22421793..22421989 | 649..840 | 720 | 97 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:02:57 has no hits.
FMO13968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:22 Download gff for
FMO13968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rad50-RD | 79..999 | 1..908 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:21 Download gff for
FMO13968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rad50-RD | 79..999 | 1..908 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:21 Download gff for
FMO13968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22421091..22421738 | 1..649 | 99 | -> | Plus |
| 2R | 22421794..22422007 | 650..855 | 95 | -> | Plus |
| 2R | 22422064..22422100 | 856..890 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:22 Download gff for
FMO13968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18308596..18309243 | 1..649 | 99 | -> | Plus |
| arm_2R | 18309299..18309512 | 650..855 | 95 | -> | Plus |
| arm_2R | 18309569..18309605 | 856..890 | 91 | == | Plus |
