FMO13971.5prime Sequence
1069 bp (975 high quality bases) assembled on 2014-01-10
> FMO13971.5prime
TCAGTCGACATGATGCGTCACTCCAGTTTGCGCCTTATAATTGGCGGCCT
GATACTCCTCCTCTTTGTGCTTAATGTCTTCAGCAAGGAACAGGGATCTC
ATTCCCACAAACGCAGCCATTCGGCGAAGAGATTCTCGCGGGACTCCAAC
TCCGCACGTGAGCGACGCCCAAACATAATCCTCATTCTGACCGATGACCA
GGATGTGGAGCTGGGCTCCCTTAACTTCATGCCGCGCACGTTGCGACTTC
TTAGAGATGGAGGAGCCGAATTCCGACATGCCTATACCACCACACCCATG
TGCTGTCCGGCGAGATCGTCTCTGCTGACTGGGATGTACGTCCACAACCA
CATGGTGTTTACCAACAATGACAACTGCTCCAGCCCACAGTGGCAGGCCA
CTCATGAGACGCGATCCTATGCCACATACCTCTCGAATGCAGGCTATCGC
ACCGGCTATTTCGGAAAGTATCTAAACAAGTACAATGGATCCTATATCCC
ACCAGGTTGGCGGGAGTGGGGAGGATTGATCATGAACTCCAAGTACTACA
ACTACAGCATCAACCTGAATGGACAAAAAATTAAGCACGGTTTTGACTAC
GCTAAAGACTACTATCCGGATCTGATAGCCAATGACTCGATTGCCTTCCT
CCGCTCCTCAAAGCAACAGAACCAGCGGAAGCCAGTGCTGCTCACCATGA
GTTTTCCTGCACCACATGGCCCTGAGGATTCGGCTCCCCAGTATAGTCAT
CTCTTCTTTAATGTGACAACCCATCACACTCCATCGTATGATCACGCCCC
AAATCCGGACAAGCAATGGATCCTGAGGGTCACGGAACCCATGCAGCCTG
TTCACAAAAGGTTCACCAATCTGCTCATGACGAAGCGACTGCAAACGCTT
CAAGTTGTCGACGTTGCCGTGGAGCGGGTTTATACGAGCTAAAAGAACTC
GGAGAGCTGGACAAACTTATAAGTAACACTTCCGATCTCTGGTTATCACT
CTGGGTTAGATTGGACCATTAAGGAATAGCTTTCCATTGAAATTGAAGTC
CGTGTGCGCTTTCCTATCC
FMO13971.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sulf1-RC | 4401 | CG6725-RC | 418..1471 | 10..1057 | 4835 | 97.8 | Plus |
| Sulf1-RB | 5042 | CG6725-RB | 1059..2112 | 10..1057 | 4835 | 97.8 | Plus |
| Sulf1-RA | 4835 | CG6725-RA | 852..1905 | 10..1057 | 4835 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16314365..16315131 | 776..10 | 3835 | 100 | Minus |
| 3R | 32079331 | 3R | 16313962..16314150 | 964..777 | 850 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:02:30 has no hits.
FMO13971.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:06 Download gff for
FMO13971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sulf1-RA | 852..1867 | 10..1022 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:04 Download gff for
FMO13971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sulf1-RA | 852..1867 | 10..1022 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:04 Download gff for
FMO13971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16313910..16314150 | 777..1017 | 94 | <- | Minus |
| 3R | 16314365..16315131 | 10..776 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:06 Download gff for
FMO13971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12139632..12139872 | 777..1017 | 94 | <- | Minus |
| arm_3R | 12140087..12140853 | 10..776 | 100 | | Minus |
