FMO13972.5prime Sequence
1042 bp (948 high quality bases) assembled on 2014-01-10
> FMO13972.5prime
TCAGTCGACATGTTCGCGGGAATAAGGAAACGCCTGGCACGCAAGCAAAA
CGAGAAGGACTGCGATGAGGACGACAAGGAGGATGTGCTCGATAGTATGC
CACCACCTCCGAATTACATACAGATCTCGCAGGGCAGGATTCAGTTGGTC
CACCAGCCGAGAACGCCCGTTGAATCGGAGGCGGGAACTCTGTCCCTGGA
GCGGCACGGGGGCTCGATCTCCGGATCCGGCGGCTGTGATAAGGATGTGT
TGGAGAAGCGGATGATTGAAGTTGAAGGCGCTCTGCTGCGTTTGCAGGAG
CAGTTCCAGAAAAGCCAATGCGGGTCGCCTACGTTCGAGAAGGAATTGCG
CGAACAAATTGAGAACATGAATCGCATTATGAAATCCAAAGAACGCAAGC
AAATGCAGACATGTCGGGATCACAAGGCACTGCAGACGCGCTTTGCCCGA
CAGGAGAGCCTGCTCCAATCGATGCAGCAGGAGAATCGATCCTTGCTCAC
ACGAATCCGTCAGTATGAGCACTGCCTGGATGATGTGATGCGCAAGGTGG
TGGACGCCATTGTGGCAGAAGATAATCTCCGTGAGGAGGTGAGCATGCTG
AAGGGCCGGGTTCGAGATCTGGAGGCGCAAAATGCTGCTCTGTCCGCCAG
TCCGGTGAAGGGCAGGGATGAAGGCTACTGCACCATGAGCAGTGGGCAGC
CGCAGCCGTCGAATGGGCATCTGGAAGATCTGCCCGAGGAACCGGAACAG
TGGCTCTTGCCTGCCGAACCCTGCTCCACAGAAATGGAGGACTGGAGCAT
GTCGCAGAGGACTGGCAGTGATGACGTTCGACGACGAGCGGGATCCACAT
CACCTCATCTCAGCAGCAGCGGAGGAGAGGGATCACGACTGGCTGTGCAT
CGAGCGACTTTATTACTCACACGTGAACGGATTCGTGGCGATGCATACCA
GCTGCTGCAGCGAAGATTGTCTACATCCGAAGAGCGAGGAGTGCCTGCCC
GACCTTAACACCGACTCTCTCGACTGTACATCGCTCGAATTC
FMO13972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42663-RD | 4065 | CG42663-RD | 1133..2159 | 10..1016 | 4490 | 97.2 | Plus |
| CG42663-RB | 4068 | CG42663-RB | 1133..2159 | 10..1016 | 4490 | 97.2 | Plus |
| CG42663-RC | 3999 | CG42663-RC | 1367..2090 | 313..1016 | 2975 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12748908..12749399 | 431..915 | 2150 | 98.2 | Plus |
| 2R | 25286936 | 2R | 12734917..12735120 | 41..244 | 1005 | 99.5 | Plus |
| 2R | 25286936 | 2R | 12738434..12738504 | 242..312 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 12747678..12747747 | 366..435 | 350 | 100 | Plus |
| 2R | 25286936 | 2R | 12746609..12746661 | 313..365 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:02:33 has no hits.
FMO13972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:08 Download gff for
FMO13972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RB | 1124..2140 | 1..998 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:06 Download gff for
FMO13972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RB | 1124..2140 | 1..998 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:06 Download gff for
FMO13972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12734921..12735119 | 45..243 | 100 | -> | Plus |
| 2R | 12738436..12738504 | 244..312 | 100 | -> | Plus |
| 2R | 12746609..12746661 | 313..365 | 100 | -> | Plus |
| 2R | 12747678..12747747 | 366..435 | 100 | -> | Plus |
| 2R | 12748913..12749461 | 436..965 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:08 Download gff for
FMO13972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8622426..8622624 | 45..243 | 100 | -> | Plus |
| arm_2R | 8625941..8626009 | 244..312 | 100 | -> | Plus |
| arm_2R | 8634114..8634166 | 313..365 | 100 | -> | Plus |
| arm_2R | 8635183..8635252 | 366..435 | 100 | -> | Plus |
| arm_2R | 8636418..8636966 | 436..965 | 96 | | Plus |
