FMO13973.5prime Sequence
1076 bp (957 high quality bases) assembled on 2014-01-10
> FMO13973.5prime
TCAGTCGACATGTTGTTTTGGAAGAGGCGTCTTCAGCGATCGAGCAGCTC
TTCGAGTGCGATTCAGGAGCGTCGTTTTTTTGGCATCCTCCGTTCGGCGA
AAAGGAAGGACGCTGCCACATCGTTACCAACCTATCGTCACAATGGCGAC
AACGTGTCTATCACCACTGCCCCACCTGCGGATAGACTGCCTCTGGGTTA
CGAGGGAGCTGGAACTATAGAGCTGCAGGCTCAGGAGAACGACTACGTGC
TTGAGGAGTCCGCCCTACGAGTCCCACTCTCCCCGCCGCCGAACTACTCT
CCGCATCCTTTGACCCCACCGCCCAGTTACACGGAGAGACCAAGATCAGT
CCAGGAACACAGATCGCACTTGGCCGAGGCACTGCATCCAGCTGCCCCCG
CACGTGTAGTGATATTTCCCCCAGTAGGCGCAAATACAGCAGCTAGCGAA
CAGGCAGCACGTCAACAAGCCAGAAGGAGACGGCGACTCCGGGAGCTTCA
GCAGCAGCAGCTGCGATTCGCCTCCAGCACCGATAGCTCCAGTAGCTCCG
GATCCAGTTGCTCCGAATTAGGGAGCGACAGTGCTAGCAGAAGGCAGCGT
CGACGCAGGCGGGGATTAAGGGATGCCTATTGTCCAGATCTTCTGAACGC
GTGCTCTCTGATCCTCCAGAACCCCGGCAGCAGTGACAGTTCCGTGGGTA
ACTTCACGGCCACGCCCCCGCCTCCGGTGCGAGCACCTGGTCACCGGGAT
CAGGAGGAGAGCTTCGAGTACAGCTCCGACTATGTGGAGATCGACGAGCT
GCTGCCACTAGTCGCCGGCGGGAGAGCGAAGAGCACTCCGCAGCTGGCGA
TGGGTCAAAACCTGAGCCTGCGACGGCCGCGCATCTCATTGACCTGGGTG
CTCCGAGAGCAGCAGCAGACGCAGCAAGCTCCTCGTCGCAAACACCTCTC
ATCCCGCAGATAGCAGCGATGATCGGACAGCCAGTGCTTGATCGCAGAAA
CGAAGTCTCCCGCCAAGACAGAAGCCCGTGCCACCAGCTTGGATGTCACA
AGAAGCGGTTACCTGTTAAGCAGCTA
FMO13973.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7991-RB | 3727 | CG7991-RB | 414..1493 | 10..1076 | 4820 | 97.4 | Plus |
| CG7991-RC | 4073 | CG7991-RC | 806..1839 | 56..1076 | 4590 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1712273..1712783 | 112..622 | 2555 | 100 | Plus |
| 3L | 28110227 | 3L | 1712840..1713165 | 622..946 | 1550 | 99.1 | Plus |
| 3L | 28110227 | 3L | 1698647..1698703 | 56..112 | 285 | 100 | Plus |
| 3L | 28110227 | 3L | 1675122..1675169 | 10..57 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:03:10 has no hits.
FMO13973.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:29 Download gff for
FMO13973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7991-RB | 410..1492 | 2..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:29 Download gff for
FMO13973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7991-RB | 410..1492 | 2..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:29 Download gff for
FMO13973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1675118..1675167 | 2..55 | 92 | -> | Plus |
| 3L | 1698647..1698703 | 56..112 | 100 | -> | Plus |
| 3L | 1712274..1712783 | 113..622 | 100 | -> | Plus |
| 3L | 1712841..1713306 | 623..1075 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:29 Download gff for
FMO13973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1675118..1675167 | 2..55 | 92 | -> | Plus |
| arm_3L | 1698647..1698703 | 56..112 | 100 | -> | Plus |
| arm_3L | 1712274..1712783 | 113..622 | 100 | -> | Plus |
| arm_3L | 1712841..1713306 | 623..1075 | 94 | | Plus |
