FMO13975.5prime Sequence
874 bp (872 high quality bases) assembled on 2014-01-10
> FMO13975.5prime
TCAGTCGACATGCGCATAATTCAACCGGTCCAAGGGACCAGATACGGTCC
ATGGCCGGCCGTGGGACTGAGGCTAGTCCTGGCCCTTGCCTGGGCAACGT
CGGCAGCGGCTGCCATGGAGTCATCAGCCGAGCTGCAGGCCCTGGGCTAC
GAGGCAATTAGGCCAGGTGCTGCCTCAATTAGCACATCCAGCCCATCCAG
CTCGCCACCCGGAGAATCGGCATCGACTGTGACTGCAGGGGGGACTCCGA
TTCCACCGCGCTCCGATTGGAAGTACAAACGGACGAAAGTCAAACGCCGG
CAGCAGCGCCTCAATTCGCACAGCAATCTGCCCGGAAGCACCAATGCCTC
CCACGCCCACCACCTCCTCAATCTGCCCCCCAGGCAGCGATACTTGAAGG
TCAACCAGGTGTTCGAAAGCGAACGCCGCATGTCGCCGGCCGAAATGCAG
CGCAATCATGGCAAAATCGTGCTGCTCGGACTCTTTGAGCTGTCCACATC
GCGGGGACCACGTCCGGATGGTCTGAGCGAATTGGGAGCTGCCACCATGG
CCGTGGAGCACATCAACCGCAAGCGCCTGCTGCCGGGCTACACCCTCGAG
CTCGTGACCAACGATACTCAGTGTGATCCTGGAGTGGGCGTGGATCGCTT
CTTCCACGCCATCTACACACAGCCCTCGACGAGGATGGTGATGCTGCTGG
GATCGGCCTGCTCGGAGGTCACGAGAGCCTGGCGAAAGTGTGCCCTACTG
GAACATCGTGCAGGTATCCTTCGGTTCCACATCGCCGGCGTTGAGCGACA
GGCGGGAGTTCCCCTACTCTACAGGAAGGTGGCCCCGGACTCCTCACCAA
TCCGGCGCGCATCGCTTTCATTCG
FMO13975.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GABA-B-R3-RG | 5987 | CG3022-RG | 584..1452 | 10..874 | 4215 | 99.3 | Plus |
| GABA-B-R3-RF | 5633 | CG3022-RF | 320..1188 | 10..874 | 4215 | 99.3 | Plus |
| GABA-B-R3-RE | 5991 | CG3022-RE | 845..1713 | 10..874 | 4215 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 753119..753730 | 10..621 | 3060 | 100 | Plus |
| 2L | 23513712 | 2L | 754483..754632 | 618..765 | 635 | 98 | Plus |
| 2L | 23513712 | 2L | 755019..755133 | 762..874 | 460 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:03:15 has no hits.
FMO13975.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:32 Download gff for
FMO13975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GABA-B-R3-RE | 841..1713 | 6..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:33 Download gff for
FMO13975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GABA-B-R3-RE | 841..1713 | 6..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:33 Download gff for
FMO13975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 753115..753730 | 6..621 | 99 | -> | Plus |
| 2L | 754487..754630 | 622..763 | 97 | -> | Plus |
| 2L | 755021..755133 | 764..874 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:32 Download gff for
FMO13975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 753115..753730 | 6..621 | 99 | -> | Plus |
| arm_2L | 754487..754630 | 622..763 | 97 | -> | Plus |
| arm_2L | 755021..755133 | 764..874 | 97 | | Plus |
