FMO13979.5prime Sequence
1021 bp (906 high quality bases) assembled on 2014-01-10
> FMO13979.5prime
TCAGTCGACATGAGCATGCAAGTTTGTTCTTTGCCAGACGACATCCTTAT
ATTTAGCCTAACCCCACGGGATGGCGAGTCCGAGGACGACGAGGGCAATA
GCAAAGGAAACGATCGCAGCGAGTGCTTCTTTGCCGGCAAGGGAACCGCC
CTGGTACTGGCTCTTAAGGATATCCCGCCCCTGACGCAAAGCGAGCGTCG
CCTGAGCACCGACTCCACCCGCTCCAGTAACAGTACGCAAAGCAACAACT
CGGACATCCAGCTCCACCTGCAATCAATGTTTTACCTGTTGCAGCGCGAG
GACACGCTAAAGATGGCTGTCAAGTTGGAGTCACAGCGGTCCAACCGCAC
GCGCTATCTGGTGATTGCATCGCGTAGTTGTTGTCGGAGCGGCACCAGCG
ACCGTCGGCGCCACCGGATCATGCGTCACCACTCGGTAAAAGTTGGTGGA
TCCGCGGGAACAAAGTCGTCCACCTCCCCGGCGGTCCCCACGCAGCGTCA
GCTGTCCGTTGAGCAGACCGCCACAGAGGCCAGCAGCAAATGTGATAAAA
CAGCAGACAAGGAAAACGCAACGGCGGCCGGCGACAACAAGAATACCTCG
GGCATGGAGGAGTCCTGCCTGCTGGGCATAGACTGCAACGAGCGGACCAC
CATTGGCCTGGTGGTGCCCATCCTGGCGGACACCACAATTCACCTGGATG
GCGATGGCGGATTCAGCGTCAAAGTGTACGAAAAAACGCATATATTTAAG
CCGGTCTCAGTGCAGCCATGTGGTCCGCGCTGCAGACGCTGCACAAGTGT
CGAAAAGGCTCGTGAGACACTTCTATGCCAGTGACCCTCCCACGACTGGC
TATCAGCTACGAGAGGCGCATCGAGTCGGACAGTCTTGTCTGACGGTGAA
TGCCATGACGCGCTCGAGAGCGTCGAACACCTTCGCCTGATGCTACGAAA
CAACCCCGAAGAAGAAACGAAGTGTCATTAGATGACCTGAGGCATCATGA
TGTCATGACTGACGAGTACCT
FMO13979.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssh-RC | 4186 | CG6238-RC | 247..1269 | 10..1005 | 4430 | 97 | Plus |
| ssh-RB | 4254 | CG6238-RB | 247..1269 | 10..1005 | 4430 | 97 | Plus |
| ssh-RD | 4419 | CG6238-RD | 539..1502 | 69..1005 | 4135 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24942819..24943211 | 707..315 | 1965 | 100 | Minus |
| 3R | 32079331 | 3R | 24943275..24943522 | 316..69 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 24942215..24942398 | 943..772 | 335 | 90.2 | Minus |
| 3R | 32079331 | 3R | 24943589..24943649 | 70..10 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 24942469..24942527 | 765..707 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:03:26 has no hits.
FMO13979.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:39 Download gff for
FMO13979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssh-RB | 247..1193 | 10..943 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:40 Download gff for
FMO13979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssh-RB | 247..1193 | 10..943 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:40 Download gff for
FMO13979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24943276..24943521 | 70..315 | 100 | <- | Minus |
| 3R | 24943590..24943649 | 10..69 | 100 | | Minus |
| 3R | 24942461..24942526 | 708..772 | 98 | <- | Minus |
| 3R | 24942819..24943210 | 316..707 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:39 Download gff for
FMO13979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20768998..20769243 | 70..315 | 100 | <- | Minus |
| arm_3R | 20769312..20769371 | 10..69 | 100 | | Minus |
| arm_3R | 20768183..20768248 | 708..772 | 98 | <- | Minus |
| arm_3R | 20768541..20768932 | 316..707 | 100 | <- | Minus |
