FMO13981.5prime Sequence
1061 bp (962 high quality bases) assembled on 2014-01-10
> FMO13981.5prime
TCAGTCGACATGTATATATTAATATATATATCCATTCCGAAACATCCACA
AACAGACAAGACCAGACCGATATACCCTAGCACATTGGGAACGGAGCTTC
GAACTGAGCTCGGTAAACAAAAAATCTACTGTGCGAAATGCACGAAGAAG
TGCTCCGGCGAGGTGCTCCGCGTGGCGGACAACCACTTCCACAAGGCCTG
CTTCCAGTGCTGCCAGTGCAAGAAGTCCCTGGCCACCGGCGGATTCTTCA
CAAAGGACAACGCCTACTATTGCATACCGGACTATCAGCGGCTGTACGGC
ACCAAGTGCGCAAATTGCCAGCAGTATGTGGAGGGCGAGGTGGTCAGCAC
CATGGGCAAGACCTATCACCAGAAGTGCTTCACCTGCTCCAAGTGCAAGC
AGCCCTTCAAGTCGGGCAGTAAGGTGACCAACACCGGAAAGGAGGTGCTT
TGCGAGCAATGCGTCACGGGTGCTCCAGTGTCGCCCAGTCGCCAGGCGAC
GGGTGGAGGCGTCTCCTCGCCAGCTCCTCCGGCGGAGAGTCCGACGAGAG
CCACTGCCCACCAGCAGCACGGCAGTGTGATCTCTCATAAGGCGCACCTC
AAGGAGGACTACGATCCCAATGACTGTGCCGGCTGTGGGGAGCTGCTGAA
GGAGGGCCAGGCACTGGTGGCGTTGGACCGGCAGTGGCATGTCTCTTGTT
TCCGGTGCAAGGCCTGCCAGGCGGTGCTCAATGGGGAGTACATGGGCAAA
GACGCGGTGCCCTACTGCGAGAAGTGCTACCAGAAGGGATTCGGGGTGAA
GTGTGCCTACTGCAGTCGCTTCATTAGCGGCAAGGTGCTCCAGGCGGGCG
ACACCACCACTTCCATCCGACCTGTGCCCGCTGCACAAGTGCGGCGATCC
CTTCGGCGACGCGAGGAGATGTACTGCAGGCAGTGCATCCTGGCATTCCG
CGATGCGGTCGGGTCCCTCGAAATCCGGGTAATTATGACAGGCGGCGGAG
ACCTTCTGCTCGGTGGTCGGAGATGCCTCCCAGTGCACTCCAAAACCTGA
ATGGACCGATG
FMO13981.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115b-RD | 2784 | CG31332-RD | 100..1125 | 10..1030 | 4690 | 97.9 | Plus |
| Unc-115a-RC | 3200 | CG31352-RC | 293..1318 | 10..1030 | 4690 | 97.9 | Plus |
| Unc-115b-RC | 2514 | CG31332-RC | 100..1140 | 10..1030 | 4530 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9690492..9691105 | 1030..422 | 2390 | 95.9 | Minus |
| 3R | 32079331 | 3R | 9698378..9698991 | 1030..422 | 2390 | 95.9 | Minus |
| 3R | 32079331 | 3R | 9691161..9691476 | 427..112 | 1580 | 100 | Minus |
| 3R | 32079331 | 3R | 9699047..9699362 | 427..112 | 1580 | 100 | Minus |
| 3R | 32079331 | 3R | 9691635..9691742 | 117..10 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 9699521..9699628 | 117..10 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:03:31 has no hits.
FMO13981.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:43 Download gff for
FMO13981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115b-RD | 91..1138 | 1..1042 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:44 Download gff for
FMO13981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115a-RC | 284..1331 | 1..1042 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:44 Download gff for
FMO13981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9690479..9691103 | 424..1042 | 95 | <- | Minus |
| 3R | 9691165..9691475 | 113..423 | 100 | <- | Minus |
| 3R | 9691640..9691751 | 1..112 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:43 Download gff for
FMO13981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5516201..5516825 | 424..1042 | 95 | <- | Minus |
| arm_3R | 5516887..5517197 | 113..423 | 100 | <- | Minus |
| arm_3R | 5517362..5517473 | 1..112 | 96 | | Minus |
