FMO13983.5prime Sequence
1081 bp (979 high quality bases) assembled on 2014-01-10
> FMO13983.5prime
TCAGTCGACATGGATTCTACTTTAAATATTGAGAATGTCAATGACCCAAC
ATCCATTGCATCTGATTTATCGGCCGAAAACACTAAAGCAGACCTTGTTT
CGCTAAATGAACCGAATGTCAATGACCAAACATCCAGTGCATCTGATTTG
ACGGCCGAAAACACTAAAGCAGACCATGATTCGCTAAATAAACCTAAGGA
TTTTAATAACCAAATTCTGAACATTATATCGGATATAGATATAAATATAA
AAGCACAGGAAAAAATAACACAGCTTAAAGAACAAGAACTAAAACTCATT
CAGAAACAGAATGATCTGGCAAATGAAATCCATAAGCAGCAGATCCTAGC
TAAGCAGCTTAGTGCACAAAATCAGCTTAAACAAAATGAATGTCAAAGTG
GAGAGCTCGACTTACACAGTCAATATCAAAATGAGCGCGGCGGACCCACC
TCGACACTGTATCAGGAAAAAAATATAGCCAGTAAAGAATCCGCTAATGT
GTCGAAGACGGTTGATTTGCGAAAAATATTTACACCTGCGACCGATGCTG
CTGAAATATTACCGAAAAACCGAAAGCTATATGCCTCGTCTGCATTTTAT
TCTCCAACACTACACCCTACAGTGGAAGACCAAGTCGAGCTAGCTCGAAG
AATTTCACATTCATTAAGCGATATAAGTAATCAAACCTCTAAGGGTCAGT
CTATGTATGTCAATCGCAAAAAACGCTCAGACAAATGGGTTCATGAATGT
GGATCTCAAGGGAATGATGCTATAAATCCATTTAAAGAAAATTCTGAAAC
GAAATCCACAATGGAGGTTGCGAAGTTGGAAAAATACCGCTAAAGCTTAT
AATGACCCAAACGGAAAAGTTCGTGATTATATTCGCTAAAGATTTATTAC
GTTGAAGCTGGCTTTTATCGCTGACAATTGCGCTGACTATACTGCACTTC
ACTTCATCAAGACGAGGTGCAGAACTTTTGCGAAGCGCCGCAAAAGCTGA
TATGGGTAGTCATGAATTCCATTCAGAATCCAATCTTCATCTGGAATCCG
ATTTCACCGATCACAGGCCTGTCTAAGTTCC
FMO13983.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1674-RJ | 2419 | CG1674-RJ | 195..1230 | 10..1026 | 4685 | 98 | Plus |
| CG1674-RH | 3016 | CG1674-RH | 816..1827 | 34..1026 | 4565 | 97.9 | Plus |
| CG1674-RF | 2899 | CG1674-RF | 699..1710 | 34..1026 | 4565 | 97.9 | Plus |
| CG1674-RJ | 2419 | CG1674-RJ | 218..298 | 114..194 | 300 | 91.4 | Plus |
| CG1674-RJ | 2419 | CG1674-RJ | 299..379 | 33..113 | 300 | 91.4 | Plus |
| CG1674-RH | 3016 | CG1674-RH | 896..976 | 33..113 | 300 | 91.4 | Plus |
| CG1674-RH | 3016 | CG1674-RH | 816..895 | 115..194 | 295 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 237269..237560 | 196..487 | 1460 | 100 | Plus |
| 4 | 1348131 | 4 | 240645..240839 | 572..766 | 945 | 99 | Plus |
| 4 | 1348131 | 4 | 242459..242644 | 759..936 | 550 | 95.2 | Plus |
| 4 | 1348131 | 4 | 240314..240410 | 487..583 | 440 | 96.9 | Plus |
| 4 | 1348131 | 4 | 234263..234345 | 32..114 | 415 | 100 | Plus |
| 4 | 1348131 | 4 | 236394..236475 | 114..195 | 410 | 100 | Plus |
| 4 | 1348131 | 4 | 236393..236474 | 32..113 | 305 | 91.5 | Plus |
| 4 | 1348131 | 4 | 234264..234344 | 114..194 | 300 | 91.4 | Plus |
Blast to na_te.dros performed 2014-11-29 00:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tirant | 8526 | Tirant TIRANT 8526bp | 577..646 | 239..308 | 116 | 62.9 | Plus |
FMO13983.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:26 Download gff for
FMO13983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RJ | 192..1221 | 7..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:25 Download gff for
FMO13983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RJ | 192..1221 | 7..1017 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:25 Download gff for
FMO13983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 231951..231977 | 7..33 | 96 | -> | Plus |
| 4 | 234265..234345 | 34..114 | 100 | -> | Plus |
| 4 | 236395..236475 | 115..195 | 100 | -> | Plus |
| 4 | 237269..237559 | 196..486 | 100 | -> | Plus |
| 4 | 240314..240398 | 487..571 | 100 | -> | Plus |
| 4 | 240645..240833 | 572..760 | 99 | -> | Plus |
| 4 | 242461..242679 | 761..966 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:26 Download gff for
FMO13983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 252577..252603 | 7..33 | 96 | -> | Plus |
| arm_4 | 254891..254971 | 34..114 | 100 | -> | Plus |
| arm_4 | 257021..257101 | 115..195 | 100 | -> | Plus |
| arm_4 | 257895..258185 | 196..486 | 100 | -> | Plus |
| arm_4 | 260940..261024 | 487..571 | 100 | -> | Plus |
| arm_4 | 261271..261459 | 572..760 | 99 | -> | Plus |
| arm_4 | 263087..263305 | 761..966 | 94 | -> | Plus |
