FMO13985.5prime Sequence
1055 bp (959 high quality bases) assembled on 2014-01-10
> FMO13985.5prime
TCAGTCGACATGAGTGGCCATCCATCGGGAATCCGGAAACATGATGATAA
TGAGTGTAGTGGCCCACGACCACCAGTACCCGGAGAAGAGAGCCGTGTTA
AAAAGATGACCGAAGGGGTAGCAGATACCTCGAAGAATTCGTCGCCATCC
TACCTGAACTGGGCCCGGACGCTGAACCACCTGCTGGAGGACCGCGATGG
GGTCGAGCTCTTCAAGAAGTACGTGGAGGAGGAGGCGCCCGCCTACAACG
ACCACCTCAACTTCTACTTCGCCTGCGAGGGCCTCAAGCAGCAGACGGAT
CCGGAGAAGATCAAGCAGATAATCGGAGCCATCTACAGATTCCTGCGCAA
GAGTCAGCTGTCCATCTCCGATGACCTGCGCGCCCAGATCAAGGCCATCA
AGACGAATCCCGAGATCCCGCTCAGCCCACACATATTCGATCCCATGCAG
CGCCATGTGGAGGTCACCATCCGCGACAACATCTACCCCACGTTTCTCTG
CTCCGAGATGTACATCCTCTACATCCAGCAGATGTCCGCCCAGCAGGAGC
GCTGCACCAGCAGCGGCGCCACGGGATCGGGAAGTGCCGGGAGTAGTGGC
AGCGGCGGCAGCAGCCTAGCGGGCGCCTGTGCCCTGCCACCGACCACCGC
GTCCGGCAAGCAGCAGCTCCCGCAGCTGGTGCCGCCCGGTGCCTTCATCA
ACCTGCCGGTGAGCAGCGTGAGCGGCCCGCCAGCTGGCACGTGCAGTGCC
AGCGGCAGTGTGTACGGTCCCTCGACTTCGGCCAGCTCCAGCGGCTCAAT
AAGCGCCACCGACACACTGCCCCGCAGCTCCACGCTGCCCACGCTGCACG
AGGACTCGGTGCTGTCGCTCTGCGACGACTTCGAGAGTGCAGATGCAGAA
GGCCGCGGATCCCTCGCTCTGGATCTGTGGGCGCGGGTGCGCGAGCGCCC
GACTACCGATCGCCTCAGCCGGACTACTATAGCAACTCAGAAAGAAAATG
GAATCCGAACTCCTGGGGACGTGCCCGTACATCCAAGCGAACCAGGCCTG
GAGAT
FMO13985.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axn-RF | 4535 | CG7926-RF | 1456..2497 | 9..1036 | 4720 | 97.7 | Plus |
| Axn-RD | 4553 | CG7926-RD | 1456..2497 | 9..1036 | 4720 | 97.7 | Plus |
| Axn-RG | 3620 | CG7926-RG | 403..1422 | 9..1016 | 4660 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30031417..30032045 | 333..957 | 2890 | 98.4 | Plus |
| 3R | 32079331 | 3R | 30031110..30031344 | 104..338 | 1145 | 99.1 | Plus |
| 3R | 32079331 | 3R | 30030950..30031046 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed 2014-11-29 00:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 1196..1258 | 251..190 | 114 | 66.7 | Minus |
FMO13985.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:47 Download gff for
FMO13985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axn-RD | 1448..2502 | 1..1045 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:52 Download gff for
FMO13985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axn-RD | 1448..2502 | 1..1045 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:52 Download gff for
FMO13985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30030942..30031046 | 1..105 | 96 | -> | Plus |
| 3R | 30031112..30031344 | 106..338 | 99 | -> | Plus |
| 3R | 30031423..30032112 | 339..1016 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:47 Download gff for
FMO13985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25856664..25856768 | 1..105 | 96 | -> | Plus |
| arm_3R | 25856834..25857066 | 106..338 | 99 | -> | Plus |
| arm_3R | 25857145..25857834 | 339..1016 | 97 | -> | Plus |
