FMO13986.5prime Sequence
717 bp (697 high quality bases) assembled on 2014-01-10
> FMO13986.5prime
TCAGTCGACATGTACAAAAATGCACTGAAAGGCGGTATTCGCACGGCCAA
GCAGGCTTGGAAGTTAAAAAACGAACTGGGCAAACTCAACTTGGACTTGG
CCAAGGCAAACTCAGATTTTGAGCAGCATTTGTGCGAAGCTGCCAGATAT
ACTCAGAGTTTCCACTTCCTCGCCAGAAACACCCCGAGAACACCTTTGTT
GCTACTAAAAACGACAGGCGATAACAACAGCTCCCCCCGAATCGTTGCTA
ACTATTATCGGACAGCTCCAGTTAACCCCCCGAAGCAGCAGAATCCGAAA
CCCAGCGGAGCGGCAGATAAGACCACCTCAGTAAAGCATCTTTTTCGAGC
AGAAAGTGGCCACCTCAACGCGCTAATCTCGTCGAAGCAATTTGTGAAGG
TGCAAAAGCAGTTCTACAGGGACTTCTCTTCCGTTTCGCTTGGAGCCCCT
CTGAAGAGCAGTGACGCTCCGTTGCTGGGAGATTTGTGCAGTCAGTATCG
CGCCATCCTCGCCCACACATCAGCGGACGTGATTCCAGGCCAGGATCGCC
ATCATCCGGGTTGCAACTATCAGCAGATCAGGCGGGCACACACACAGTTA
CTGAGCAAGGGAGCAGCAGCTGGAGCACGAGCACAAGATGGCCCAGAACG
CAAAGTTCGAGAAGCTGCCCCACAAAGTGGTGGCCAAGGCACTAAAGAGC
ATCCTCCTGAAGCCCAA
FMO13986.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psa-RC | 3781 | CG1009-RC | 92..796 | 9..717 | 3295 | 98 | Plus |
| Psa-RI | 3665 | CG1009-RI | 106..680 | 139..717 | 2645 | 97.6 | Plus |
| Psa-RE | 3715 | CG1009-RE | 156..730 | 139..717 | 2645 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1518175..1518729 | 138..694 | 2565 | 98.2 | Plus |
| 3L | 28110227 | 3L | 1517986..1518052 | 73..139 | 335 | 100 | Plus |
| 3L | 28110227 | 3L | 1517691..1517755 | 9..73 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:03:48 has no hits.
FMO13986.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:48 Download gff for
FMO13986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psa-RC | 89..794 | 3..715 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:54 Download gff for
FMO13986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psa-RC | 89..794 | 3..715 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:54 Download gff for
FMO13986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1517688..1517755 | 3..73 | 95 | -> | Plus |
| 3L | 1517987..1518052 | 74..139 | 100 | -> | Plus |
| 3L | 1518177..1518715 | 140..677 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:48 Download gff for
FMO13986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1517688..1517755 | 3..73 | 95 | -> | Plus |
| arm_3L | 1517987..1518052 | 74..139 | 100 | -> | Plus |
| arm_3L | 1518177..1518715 | 140..677 | 97 | -> | Plus |
