FMO13987.5prime Sequence
989 bp (963 high quality bases) assembled on 2014-01-10
> FMO13987.5prime
TCAGTCGACATGAATCGCACCGACGACATGAAGAATGCCTCGCTGAACGA
CTACAAGCTGGAAGCGATGGCCTCCGTCGGCTGGGCGGTGGACTCGGACA
TTCCAATGGCGAGTGCCGAGAACTTGGCCATCCTAAAGGAACTGACTGCT
CTGCGGGCGTTGAAGCTGGAGCTGCAGCAGCACATGAACTCGCTGGATGA
GCGCGAGATGGCGGTGGAACGACATACCCGCAACATTGAGGGCACTATTC
AGCAGAACCTGACACTGTACAGCTCCCTGAAGGATGATGTTATCAAGGAG
GCGCACAACGTCCAGCTTGTGATCTTGGAGCGCAACAAGATCAAGGAGGA
TCTGCGGAAGAATAACAAGGAGCTGGAGGAGTACACTGAATATGTCAAAG
TCACTGAGCGAAAGATTTGCCAGAGCAAGCGCGAGATAGATGAGCTGACT
TCCCGCATCAAGTCGGCTAAGACTACCTTGGTGGAGTGGACAGAGGCCAT
GGAAGACGGAAACAAGGGCTACCAGCTAATCGAAAAGTACTACCTCGATG
ACCAGCAAAAGGCACGGGAGCTGAACATTAAGCGTCAGCTCTTGCAGGCG
GACATCGACAAGCGGCGCAAGCAGGTGGTGCTCCTCTATGACGAGCAAAT
GACGCTGGAGAAGAATCTGGAGCGAACCGCTTGTCTGTACAGGTCTGCCC
ACGCGGAACGCCGCCAGATGGTGGAGACGTGGAAGAGCGCCGTGAACCAG
ATGACCCAGCGAGAGCACGACATTCAGCGCAGCGAGATAGAGTGTGCGGA
GCTGGCCCAGAAGCCCAGCAGACGGCTCAGACCTACAGGGAGTACGACAC
CAGCTAACCGAGGTCATCGAGAACAACCGCCAGGTGGAGCTCGCGATCGA
GTCCCTCAACGAGGAAAGCTCGACATGAAAACAATCAGATCCTGATTGAT
GCCACATTACTGGAGGACGCGAGATCGACGGACTGGCGT
FMO13987.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17387-RA | 3093 | CG17387-RA | 39..1022 | 10..985 | 4700 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4783512..4784095 | 985..410 | 2550 | 97.8 | Minus |
| 3R | 32079331 | 3R | 4784433..4784684 | 261..10 | 1260 | 100 | Minus |
| 3R | 32079331 | 3R | 4784222..4784375 | 414..261 | 755 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:03:51 has no hits.
FMO13987.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:49 Download gff for
FMO13987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17387-RA | 35..1025 | 2..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:57 Download gff for
FMO13987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17387-RA | 35..1025 | 2..989 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:57 Download gff for
FMO13987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4783509..4784095 | 410..989 | 98 | <- | Minus |
| 3R | 4784227..4784374 | 262..409 | 100 | <- | Minus |
| 3R | 4784433..4784688 | 2..261 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:49 Download gff for
FMO13987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 609231..609817 | 410..989 | 98 | <- | Minus |
| arm_3R | 609949..610096 | 262..409 | 100 | <- | Minus |
| arm_3R | 610155..610410 | 2..261 | 98 | | Minus |
