FMO13988.5prime Sequence
1049 bp (959 high quality bases) assembled on 2014-01-10
> FMO13988.5prime
TCAGTCGACATGTATCCCTCGACCTTGCCGGCGGAGGCAGATCCGAGCAC
CATGAACGGAAGCGTTGCAGAGCCTCCGGACTTCCAGGCTGCCACGGCGG
CCGCGGCGGCAGCTGCCCGGGCCAGTAGCTTGGAACAGGACGAGTGGAGC
GTGGGCGAGTGCGGATTTCTGGATCCGGATGTGCAGCGCACCATGCGGAG
CGGCAGTGCTGCGGAGGACATCACCCAGTACCCGATGCACGGCTGGGTGG
ACGTAACCAAGGAGTTCCACGATGCCTGCGCGGAGCTGCAGCCCGGGGAA
CTGGCCCAGGATATGCTGTTCGGTCTTTTTGAGGCCATGTCAGCCATCGA
GATCATGGACCCCAAGATGGACGTGGGCATGGGCTTCGACAAGCAGGATC
TTCCGCCGCCCTCTTTCGAGGCAGCCATTGCCACGGGCGCCATCAAACTG
GACGATCTCACGCCCTCCGAACTGATTGGCATCTATGATGCTCTGTTTTC
CTGCCTGGTGTCCTGGCTGGAGGGCAACTCCATGGACCAGGTTCTATTCA
CCTGCCTCTACCTGCACGCTCCCGCACAGATCAAGGATAAGGCGCTGCGC
GTCTTCTGCACTGCCGTGCGCAATCTCATCGTGGTCATCAAGAAAATTAT
TGCCGTGGCAGCTGTCAACGAGGAGGAGGACTTCCAGCTGTACGGAAATT
CTGCTCTTCTGGCTGCAGAGAAGGCACAGCCAGCCACTGTTTATAGCTCG
CTAAAGGATGTGGAGGATGAGCTCATACGCAAGTGCAAAAAGCTGACTTC
CACGGAGGACTGGATGGCCGTGGTTCACCGGCTGCGTTTCATGCGCCATC
TTTTCCAGTGATCTACCACGTGAGCAAATGGCAGCATGATACCGTCGATG
ACAGTAGACATATACAATCTGCTGTGCTCGAGATGCTTCAGAATAAGACA
CTTGATCGGGCACACACCGAGAAGGTCTGACGCTCCATCCATGGTTTTCT
CCGCATCCGACCGAGCCACGCCCCGTTTCCGGTAAAATAATAGAATGCC
FMO13988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4065-RB | 2536 | CG4065-RB | 138..1156 | 10..1001 | 4475 | 97.3 | Plus |
| CG4065-RA | 2539 | CG4065-RA | 138..1159 | 10..1001 | 4435 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24136845..24137335 | 917..433 | 2190 | 98.8 | Minus |
| 2R | 25286936 | 2R | 24137399..24137770 | 432..61 | 1860 | 100 | Minus |
| 2R | 25286936 | 2R | 24137861..24137913 | 62..10 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:03:54 has no hits.
FMO13988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:50 Download gff for
FMO13988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4065-RB | 138..1058 | 10..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:58 Download gff for
FMO13988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4065-RB | 138..1058 | 10..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:58 Download gff for
FMO13988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24136838..24137335 | 433..924 | 98 | <- | Minus |
| 2R | 24137399..24137768 | 63..432 | 100 | <- | Minus |
| 2R | 24137861..24137913 | 10..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:50 Download gff for
FMO13988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20024361..20024858 | 433..924 | 98 | <- | Minus |
| arm_2R | 20024922..20025291 | 63..432 | 100 | <- | Minus |
| arm_2R | 20025384..20025436 | 10..62 | 100 | | Minus |
