FMO13990.5prime Sequence
897 bp (897 high quality bases) assembled on 2014-01-10
> FMO13990.5prime
TCAGTCGACATGGCTCTGTACGAAACCGTTGAGAAGGGCGCTAAGAATTC
GCCGAGCTACAGCCTGTATTTCAAAAACAAGTGCGGCAATGTCATCTCGC
CGATGCACGACATTCCACTGTACGCCAACGAGGAGAAAACTATCTACAAC
ATGGTGGTGGAGGTGCCACGTTGGACCAACGCGAAAATGGAGATTAGCTT
GAAGACCCCTATGAATCCCATCAAGCAGGACATCAAGAAGGGTAAGCTGC
GGTTCGTGGCCAACTGCTTCCCGCACAAGGGCTACATCTGGAACTACGGA
GCCCTGCCCCAGACCTGGGAAAACCCCGACCACATCGAGCCCTCCACCGG
CTGCAAGGGTGACAACGATCCCATCGATGTCATCGAGATTGGCTACCGAG
TGGCTAAGCGCGGCGACGTGCTGAAGGTCAAGGTGCTGGGCACCATTGCC
TTGATTGACGAGGGCGAAACCGACTGGAAGATAATCGCCATCGATGTGAA
CGATCCGTTGGCCTCGAAAGTCAATGATATCGCCGATGTGGACCAGTACT
TCCCGGGTCTGCTTCGTGCCACCGTTGAGTGGTTCAAGATCTACAAGATC
CCCGATGGCAAGCCTGAGAATCAGTTTGCTTTCAACGGCGATGCCAAGAA
TGCGGACTTTGCCAACACCATCATTGCCGAGACCCACAAGTTCTGGCAGA
ACTTGGTGCACCAGAGCCCCGCATCCGGGTCCATCTCCACCACCAACATC
ACCAACCGCAACTCGGAGCACGTCATTCCCAAGGAGGAGGCCGAGAAGAT
ACTGGCCCGAGGCCCCCGATGGCGGCCAGGTCGAGGAGTGTCTGATACAG
GTAAAGTTCACTATATTAGATCGAACTTAGCAAGCTTTCTAGACCAT
FMO13990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nurf-38-RC | 1281 | CG4634-RC | 134..1007 | 6..879 | 4295 | 99.5 | Plus |
| Nurf-38-RB | 1144 | CG4634-RB | 134..978 | 6..850 | 4165 | 99.6 | Plus |
| Nurf-38-RA | 1178 | CG4634-RA | 168..1012 | 6..850 | 4165 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24559830..24560227 | 588..191 | 1990 | 100 | Minus |
| 2R | 25286936 | 2R | 24559623..24559776 | 740..587 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 24560292..24560410 | 192..74 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 24559426..24559564 | 879..741 | 585 | 97.9 | Minus |
| 2R | 25286936 | 2R | 24560853..24560920 | 73..6 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:03:57 has no hits.
FMO13990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:52 Download gff for
FMO13990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nurf-38-RC | 129..1015 | 1..890 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:59 Download gff for
FMO13990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nurf-38-RC | 129..1015 | 1..890 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:59 Download gff for
FMO13990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24559830..24560225 | 193..588 | 100 | <- | Minus |
| 2R | 24559418..24559564 | 741..890 | 94 | <- | Minus |
| 2R | 24559623..24559774 | 589..740 | 100 | <- | Minus |
| 2R | 24560292..24560410 | 74..192 | 100 | <- | Minus |
| 2R | 24560853..24560925 | 1..73 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:52 Download gff for
FMO13990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20447353..20447748 | 193..588 | 100 | <- | Minus |
| arm_2R | 20447815..20447933 | 74..192 | 100 | <- | Minus |
| arm_2R | 20448376..20448448 | 1..73 | 95 | | Minus |
| arm_2R | 20446941..20447087 | 741..890 | 94 | <- | Minus |
| arm_2R | 20447146..20447297 | 589..740 | 100 | <- | Minus |
