Clone FMO13995 Report

Search the DGRC for FMO13995

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:139
Well:95
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG17715-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13995.5prime Sequence

726 bp (726 high quality bases) assembled on 2014-01-10

> FMO13995.5prime
TCAGTCGACATGCGAAATAAATTTCAATCCGCTATTAGGGGCGTAACGCG
ACAATACATTATAAGATCGTGGCCCCGAGGCAGAGAGCTATTGAGGACGC
AACTGATTATCCCGCCATCTTCTACATCTAGCCCATTTACCTGTAGAAAC
TACTCAAAGTTTAGCACACATTTGTCTATGGAGCGGGCGTTGGAGTTGCT
ATGCAACCTTGATGACGAGGAACGCGGCAACCTGCGCTCCGCTCTTGGCA
GGCTAGATGCCGACAAGGAAAAAAAATTATACGAGATTGAGACGGCAGCA
TCCCCCACGGCAGGTCAATTGTACAGCATTTTCTTTGTAAATGCAGTGCC
GTTTATCGCTTTCGGATTCCTTGACAATTTCATAATGATCATGGCGGGTG
AATACATTGAATATTATTTGGGCCACTTTATAACGCTGTCTACAATGGCA
GCCGCAGGACTAGGAAACACCATAAGCGATATTTTAGGCATCACTATGGC
CACCTACGTTGAGAATGGGTGCCAGATATTGGGTCTAAAGCAGCCCAATT
TGACTCCAGCGCAATTTGAATTAAAGTCTAGCAAGCGGTCTTCAAGTTAC
GGACGGATTGTCGGGATCACTGTAGGCTGTTTGCTTGGAATGTGTCCTTT
ATGGTTTATGGATGAAAAAGCAGATAAGGTGAATGTAAAAGATGAAATCC
CGAAAAATGCAAGCTTTCTAGACCAT

FMO13995.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-RC 1501 CG17715-RC 293..991 10..708 3495 100 Plus
CG17715-RF 4284 CG17715-RF 352..1050 10..708 3495 100 Plus
CG17715-RE 1804 CG17715-RE 873..1294 287..708 2110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 808244..808520 286..10 1385 100 Minus
2L 23513712 2L 22844571..22844847 10..286 1385 100 Plus
2R 25286936 2R 803458..803663 601..396 1030 100 Minus
2L 23513712 2L 22849428..22849633 396..601 1030 100 Plus
2R 25286936 2R 803291..803402 708..597 545 99.1 Minus
2L 23513712 2L 22849689..22849800 597..708 545 99.1 Plus
2R 25286936 2R 803717..803785 397..329 345 100 Minus
2L 23513712 2L 22849306..22849374 329..397 345 100 Plus
2R 25286936 2R 803836..803877 328..287 210 100 Minus
2L 23513712 2L 22849214..22849255 287..328 210 100 Plus
Blast to na_te.dros performed on 2014-11-29 00:03:37 has no hits.

FMO13995.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:45 Download gff for FMO13995.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17715-RF 352..1050 10..708 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:48 Download gff for FMO13995.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17715-RF 352..1050 10..708 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:48 Download gff for FMO13995.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22844571..22844847 10..286 100 -> Plus
2L 22849214..22849255 287..328 100 -> Plus
2L 22849306..22849373 329..396 100 -> Plus
2L 22849429..22849632 397..600 100 -> Plus
2L 22849693..22849800 601..708 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:45 Download gff for FMO13995.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22737303..22737579 10..286 100 -> Plus
arm_2L 22741946..22741987 287..328 100 -> Plus
arm_2L 22742038..22742105 329..396 100 -> Plus
arm_2L 22742161..22742364 397..600 100 -> Plus
arm_2L 22742425..22742532 601..708 100   Plus