FMO13996.5prime Sequence
1083 bp (991 high quality bases) assembled on 2014-01-10
> FMO13996.5prime
TCAGTCGACATGTCATCAAACAGAATCCGGCCGGAGTTGGTACTCCTGCA
GCTGCTGCTACTGGCGGCCACATTAATCCCTTTGCTGCAGGCCGGGATAG
TTACAGCTCCGTACTCCGAATCGGATTCGGATTTGGATTCGAATCCGGAC
ACCACCGCCACCACCATCGCCACCATCGCCACCATCACCACCGACAACTA
CAACCCGCATGCGGAGGAGCTGCAACTGGAATCGGAGACGGAGGCCACTG
CTGCTCAAGTGGATGGCCAACGCATCGACTGCAAATTGACTTTCGATGCG
GCGACAATGGACTCGTTAGGCTGCCACAATGAGGGGGCGTTGCCGGAGAG
GGGGGCGTTACCAGGCAGTGGTAATAAGCCGGTGGAGGAGATGCCTGAGG
CAAATCCAGACTGGCGGCGCCACTTGAAGTCACCGGACAGCCAGCCCATC
TATGAATTACAATTGGTTGTTTGGCCCAGTGACATCGAGGACGGTGATGA
CTTCAGTCCACCGCTGTCCACTACAACAACAACAGAAGCAACAACAACGA
CAGCTAGGACCACTAGAGCCACCAGTAGCACCACTAGCATCACCCCCAAG
CCCACCCAAATTGGGACACCTATTGAGCAAATATGGCCATTGTACGAGGA
TCAATTGGTTGTATTTCCGCAAATGGACTTTGAAGAGGAGAATCTTGATT
ATTTCTTCGACGAAGTGCCACCATCCACATCGTCGACCACCGGTCGCCCG
TTGACCACCAGTCATCCCACCGGCACGCCCACTCCCACGCCCATTTATGT
TGTGCAAAACTATCACGTTATACACCCCAATGCACCGAGGAGTACAAATT
GGTGATGAGCACGGCCTGTGAACTACAGAAGCTGTACTCCAGAAGTGGGT
GACCGGTGATCAACGTTCAGAGGCTACATTCATGCCCATTCCAGGACCTA
AAACCAATCCAGACCAGTACTATATTGCCGACGAGCGGGGCTACATGTCT
ATAGATCGAGCTCACTATCACCAGCCAGGTGTTGCCAACATTGCATTACA
GGCCAAAGCCAACAAATTGCAGCTTTAGACCAT
FMO13996.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11816-RB | 1470 | CG11816-RB | 14..1079 | 7..1050 | 4800 | 97.9 | Plus |
| CG11816-RD | 1958 | CG11816-RD | 502..1567 | 7..1050 | 4800 | 97.9 | Plus |
| CG11816-RC | 1808 | CG11816-RC | 502..1515 | 7..1005 | 4695 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13553411..13554252 | 847..7 | 4160 | 99.9 | Minus |
| X | 23542271 | X | 13553093..13553264 | 1005..848 | 220 | 90.1 | Minus |
Blast to na_te.dros performed 2014-11-29 00:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2407 | 505..610 | 164 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2526 | 521..606 | 157 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2799..2910 | 524..637 | 141 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2468 | 518..599 | 127 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5629..5675 | 504..550 | 127 | 74.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 504..583 | 512..592 | 123 | 63 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1160 | 518..554 | 122 | 81.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3592..3624 | 516..548 | 111 | 81.8 | Plus |
FMO13996.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:46 Download gff for
FMO13996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11816-RD | 496..1567 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:57:49 Download gff for
FMO13996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11816-RD | 496..1567 | 1..1050 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:57:49 Download gff for
FMO13996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13553092..13553264 | 848..1005 | 91 | <- | Minus |
| X | 13553411..13554254 | 1..847 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:46 Download gff for
FMO13996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13447125..13447297 | 848..1005 | 91 | <- | Minus |
| arm_X | 13447444..13448287 | 1..847 | 99 | | Minus |
