FMO14006.5prime Sequence
1109 bp (998 high quality bases) assembled on 2014-01-10
> FMO14006.5prime
TCAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTGATAACGG
CACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCCACCCACA
TTTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAACAAAATC
GGCGATATCGAAGTCAAGGATTTACATGTCGATGATCTGATGGTCGGCGA
TGAGGCCTCACAGCTGCGATCCCTGCTGGAGGTCTCCTATCCGATGGAGA
ACGGTGTGGTGCGCAACTGGGACGACATGTGCCACGTGTGGGACTACACG
TTCGGTCCCAAAAAGATGGACATCGATCCGACGAACACAAAAATCCTGCT
AACCGAGCCGCCCATGAATCCCACAAAGAATCGCGAGAAGATGATTGAGG
TGATGTTCGAGAAATATGGCTTCGATTCGGCGTACATTGCCATCCAGGCC
GTGCTGACGCTATATGCCCAGGGTCTGATCTCTGGCGTGGTGATCGATTC
GGGCGATGGTGTAACGCATATATGTCCCGTCTACGAGGAGTTTGCCCTGC
CCCATCTGACGCGACGATTGGACATTGCCGGTCGGGATATCACTCGCTAT
TTGATTAAGTTACTGTTACTACGTGGCTACGCTTTCAATCATTCCGCCGA
CTTCGAAACGGTTCGCATAATGAAGGAGAAGCTCTGCTACATTGGCTACG
ACATCGAGATGGAGCAGCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAA
TCGTACACGCTACCCGACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATT
TGAGGCGCCAGAGGCTCTGTTCCAGCCGCATTTGATCAACGTCGAGGGAC
CGGGCATTGCGGAACTGGCCTTCAACACCATCCAGGCGGCAGACATCGAC
ATACGGCCCGACTCTACAGCACATAGTTCTGTCCGGCGGCTCCACCATGT
ATCCGGGTCTTCCCAGTCGGCTGGAGCGTGAGATCAAAAGCTGTACCTGG
AGCGGGTACTCAGACCGATCCGGAAAGCTGGCGAAATTCAAATACGCATT
GAAGATCCTCCCGCGACGCAGGAATGTCTTATCGCGGACTGTCCGGCGGA
GTGTACAGG
FMO14006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp2-RC | 2217 | CG9901-RC | 560..1626 | 9..1070 | 5105 | 99 | Plus |
| Arp2-RB | 2475 | CG9901-RB | 338..1389 | 9..1070 | 4870 | 97.6 | Plus |
| Arp2-RA | 2219 | CG9901-RA | 577..1628 | 9..1070 | 4870 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16549501..16549908 | 1012..608 | 1890 | 99.3 | Minus |
| X | 23542271 | X | 16550246..16550465 | 403..184 | 1100 | 100 | Minus |
| X | 23542271 | X | 16549977..16550188 | 609..398 | 1060 | 100 | Minus |
| X | 23542271 | X | 16552339..16552451 | 169..57 | 565 | 100 | Minus |
| X | 23542271 | X | 16553344..16553392 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed 2014-11-29 00:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader6 | 4885 | invader6 INVADER6 4885bp | 1215..1270 | 476..421 | 127 | 69.6 | Minus |
FMO14006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:11 Download gff for
FMO14006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp2-RC | 551..1644 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:58:20 Download gff for
FMO14006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp2-RC | 551..1644 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:58:20 Download gff for
FMO14006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16549478..16549906 | 610..1033 | 98 | <- | Minus |
| X | 16549977..16550186 | 400..609 | 100 | <- | Minus |
| X | 16550250..16550465 | 184..399 | 100 | <- | Minus |
| X | 16551475..16551489 | 169..183 | 100 | <- | Minus |
| X | 16552340..16552450 | 58..168 | 100 | <- | Minus |
| X | 16553344..16553397 | 1..57 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:11 Download gff for
FMO14006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16443511..16443939 | 610..1033 | 98 | <- | Minus |
| arm_X | 16444010..16444219 | 400..609 | 100 | <- | Minus |
| arm_X | 16444283..16444498 | 184..399 | 100 | <- | Minus |
| arm_X | 16445508..16445522 | 169..183 | 100 | <- | Minus |
| arm_X | 16446373..16446483 | 58..168 | 100 | <- | Minus |
| arm_X | 16447377..16447430 | 1..57 | 92 | | Minus |
