FMO14007.5prime Sequence
1040 bp (1000 high quality bases) assembled on 2014-01-10
> FMO14007.5prime
TCAGTCGACATGTCGGTTAATACGGCTCACGCCAACAATGGCGTGCTCAT
CCATGCTGGAGAGTACATACTGCTCCACAGCGACAGTGTCTCCATGGAGT
TCTCCGGTCAGGACAATCCCATCTTCAAGGGCTCCAAAGGTGGCAGGATT
TATCTCACCTCCCACCGAATGATCTTCAATAGCAAGAAGTCCTCGGATTC
GATGCAGTCGTTCAGTGCCCCGTTTGTTGCTCTTTCGGATGTGGAAATCG
AACAGCCCGTTTTCGGGGCCAACTACATCAAGGGAAAGGTTCGCGCTCAG
CCAAATGGAAACTACGTGGGCGAGGTCAAGTTCAAGCTCCATTTCAAGGC
AGGCGGCGCAATTGAATATGGTCAAGCTCTACTGCGCTCCGCCAAGACGG
CGATGAACAACTACCACCGCGGTGGTCTGGCTGGTGATGATCCGCCACCA
TATCAGCCGGCTGGATCCTGGAATGAGGCACCACCGCCGGCATATCAGCC
ACCACCTGGCTACTATGGCTGGCTGCCGCAGCATGACGCATTCAGCGGCC
CTGCGCCGAATACGGTCTATATGAGCGACAATCCGCCGCCGTATCCGGGT
ATCGCACCACCTGCTCACCAACCAGCACCGCAACAGCCGCAGGCACCGTC
GTCGAATGAACCCAATTGGTATGGTTTTTCAGCGCCGCCGCCGCAGCAGC
AACAACAGCAGCCGGGCTATGGGCCACAAGGATGGGCCGGTGGCTATGTC
CAACCTCCGCCGTACGCTTCATGTGCCCCAAATTGTCCACCACAGCCGCC
GTACGCCGCTCCGGCTCAGACGTACAATGGTCCACAGCCATATGGTGGAT
ACGGCAATGTTCCTGGCGGATTTAATACCCCGGGATTTCAGCACCGATGG
AAATCCAAATGGCTATCCAGGTGACCACGCCACCGGACACAGCAGCAGGA
GCAGCTGGAGAGCGCGCATCTGGAGCAGCTTTATGGGCTTCAGCTTGCCC
CTTGACAAAAGATAAAAAAATAGCCAGCCTTTCTAGAACA
FMO14007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wbp2-RG | 1369 | CG11009-RG | 109..1137 | 7..1022 | 4800 | 98.5 | Plus |
| Wbp2-RC | 1751 | CG11009-RC | 109..1114 | 7..1001 | 4740 | 98.8 | Plus |
| Wbp2-RB | 1758 | CG11009-RB | 109..1114 | 7..1001 | 4740 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12851308..12851716 | 604..1001 | 1525 | 96.1 | Plus |
| 3L | 28110227 | 3L | 12850498..12850797 | 66..365 | 1500 | 100 | Plus |
| 3L | 28110227 | 3L | 12850915..12851153 | 366..604 | 1195 | 100 | Plus |
| 3L | 28110227 | 3L | 12850273..12850331 | 7..65 | 295 | 100 | Plus |
Blast to na_te.dros performed 2014-11-29 00:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 136..192 | 679..732 | 116 | 72.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9166..9222 | 679..732 | 116 | 72.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1031..1090 | 654..714 | 113 | 67.2 | Plus |
FMO14007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:13 Download gff for
FMO14007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wbp2-RG | 108..1147 | 1..1028 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:58:22 Download gff for
FMO14007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wbp2-RG | 103..1142 | 1..1028 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:58:22 Download gff for
FMO14007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12850915..12851153 | 366..604 | 100 | -> | Plus |
| 3L | 12850267..12850331 | 1..65 | 93 | -> | Plus |
| 3L | 12850498..12850797 | 66..365 | 100 | -> | Plus |
| 3L | 12851309..12851722 | 605..1005 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:13 Download gff for
FMO14007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12843367..12843431 | 1..65 | 93 | -> | Plus |
| arm_3L | 12843598..12843897 | 66..365 | 100 | -> | Plus |
| arm_3L | 12844015..12844253 | 366..604 | 100 | -> | Plus |
| arm_3L | 12844409..12844822 | 605..1005 | 96 | -> | Plus |
