FMO14008.5prime Sequence
612 bp (612 high quality bases) assembled on 2014-01-10
> FMO14008.5prime
TCAGTCGACATGAGGCAGCCAAGTAGACAGCACATCCTGGCGCTCCTGAT
CCTCGGCAGCGCCGCCTGCCTCATCAGCGCCGTACCGCTACCGCAGCCCG
CCAACGGTAATTCCGAGCTGGACGTCCTCCAAATCCCGCTTGCCAATGGC
AAGGAAATCGATGTCTTGACATTGGGCGCCAAAGACCAAGAATCATTGAT
AGCCGATCGCAACAAACGAACGATTGGACTGCTGCGCGAACTTTTCCCCG
ACATCACCAAGGAAATCGACTCCATAGTAAATCGAATTATAGCCCAGGTG
ATTCGGGTGGCCGGTCCTGGTCTTCTGAATACCATATTGGCCGGAAATCG
AGGTGGTGCGGGTGGTGCAGCCGGTGGAGGTACAACGCCGGCTAGCGATT
TCGATGCCGATTTCGATGCGGACTTTGACGAGGATGACGATGTGGCGCCA
TCAAGTAGTCCGGCCACACGGAGTGCAGGTAGTGCACCATCGAGCAGCAC
CAACGAGGTGGAAGAAAGCCGGCGAGTGAAAATCGATTTGCCCACGTTTG
CACCACAATCTGGAGCAGGAGCAGATGAAACGAAAGAGATAATAGCAAGC
TTTCTAGACCAT
FMO14008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32694-RG | 2729 | CG32694-RG | 246..831 | 9..594 | 2930 | 100 | Plus |
| CG32694-RB | 3153 | CG32694-RB | 246..823 | 9..586 | 2890 | 100 | Plus |
| CG32694-RH | 3542 | CG32694-RH | 1310..1644 | 260..594 | 1675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10000350..10000676 | 260..586 | 1635 | 100 | Plus |
| X | 23542271 | X | 9993045..9993190 | 9..154 | 730 | 100 | Plus |
| X | 23542271 | X | 9999191..9999301 | 152..262 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:04:34 has no hits.
FMO14008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:14 Download gff for
FMO14008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32694-RG | 243..834 | 2..598 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:58:23 Download gff for
FMO14008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32694-RG | 243..834 | 2..598 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:58:23 Download gff for
FMO14008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9993042..9993189 | 2..153 | 97 | -> | Plus |
| X | 9999193..9999300 | 154..261 | 100 | -> | Plus |
| X | 10000352..10000687 | 262..600 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:14 Download gff for
FMO14008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9887075..9887222 | 2..153 | 97 | -> | Plus |
| arm_X | 9893226..9893333 | 154..261 | 100 | -> | Plus |
| arm_X | 9894385..9894720 | 262..600 | 98 | | Plus |
