FMO14009.5prime Sequence
684 bp (684 high quality bases) assembled on 2014-01-10
> FMO14009.5prime
TCAGTCGACATGGAGCCCAACGATGAGGTGGTGGAGCGACAGAAGCTGGT
GAACGACGTGGAAACGGAGGAGGAAGCCCAAAGCGCACCGAAATCGGCCA
CACCCGCCTCGCCCGCCGTTCCGAATATCAAAATCAAAGGCATATCCAGC
GGCGAGACCACTCGCAGCAGAAACTCGGCCTCCTGCTCCATCGAGAGGAC
GATATCCGAAAAGGAGAAGGACAAGAGCCAGGGCCAGGGTCAAGCGGCCA
CCAAGGTGACCTATGTGAATGAGCGCCGGCCACGCCCGCAGGCGCACGGC
GGCAGTGGCGGGGGTGCCGGCGACGAAAGATTCGAGTTCAAGACCCGGCC
GCGCAAACTCCTGAAAGTTCCCGATGTTAAGCACATGGAAAGAGCTCTCC
TCGGACTGCTGGACGACTTTCACTCCGGCAAGCTGAGGGCATTCGCAGGC
TCCGGCTGCACAATGGACCAGATGACCAAGATTCGCGAGCAGCAGGAGAG
CCTGGCCAAATTGCATTTCGAACTGGCTGCCGCCGAGGAGGATTCGCTGG
AGCACGGCAACGAGTTCAACACCAACAAGGCGCAGGAGAACATGCTGCAG
CTGATGCAGCGCCTGGAACAGCTATCCATCTCCATCGAGCAGCTGCAGAC
GAGCCACACGGGTCTCGCAAGCTTTCTAGACCAT
FMO14009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10874-RC | 1292 | CG10874-RC | 124..780 | 10..666 | 3285 | 100 | Plus |
| CG10874-RB | 1289 | CG10874-RB | 124..777 | 10..666 | 3230 | 99.5 | Plus |
| CG10874-RD | 1586 | CG10874-RD | 124..481 | 10..367 | 1790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2191850..2192090 | 367..127 | 1205 | 100 | Minus |
| 2L | 23513712 | 2L | 2190426..2190647 | 666..445 | 1110 | 100 | Minus |
| 2L | 23513712 | 2L | 2192147..2192263 | 126..10 | 585 | 100 | Minus |
| 2L | 23513712 | 2L | 2190707..2190787 | 445..365 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:04:37 has no hits.
FMO14009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:16 Download gff for
FMO14009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10874-RC | 116..788 | 1..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:58:26 Download gff for
FMO14009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10874-RC | 116..788 | 1..675 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:58:26 Download gff for
FMO14009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2191850..2192090 | 127..367 | 100 | <- | Minus |
| 2L | 2192147..2192271 | 1..126 | 97 | | Minus |
| 2L | 2190418..2190646 | 446..675 | 98 | <- | Minus |
| 2L | 2190707..2190784 | 368..445 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:16 Download gff for
FMO14009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2190418..2190646 | 446..675 | 98 | <- | Minus |
| arm_2L | 2190707..2190784 | 368..445 | 100 | <- | Minus |
| arm_2L | 2191850..2192090 | 127..367 | 100 | <- | Minus |
| arm_2L | 2192147..2192271 | 1..126 | 97 | | Minus |
