FMO14011.5prime Sequence
1017 bp (1017 high quality bases) assembled on 2014-01-10
> FMO14011.5prime
TCAGTCGACATGAACTGGCGAAAGTTGTCCAAAAGCATGGTGCTTTCTGT
GGCCAAGAACTATGCTCAATCCGCCAGTTTTGCTGCCTGGATAAATGCCA
TTACCTTTTACTTGATGTGCATGGGAAGGCGTCTCAACGATCGATTTGTA
TTCATATTTATACCATTTCTGCCCTGCTGGATTGCCTCGCAGTTGAGTTG
GTTGATGCCTCCTCAGGTGCTTCACTTCTTCGTGACGGGCATAACACCAG
CGGCAATGGAAAGCCTAATGAGATATTTCAACATCGGTTTGGTACATTCA
CCCATGGCCCAGACTCTTCTGTTCATGATATCCTCGGTGATAGTCTTGCA
TTACCAGCAGACTCGAAAGTACTCCGGTTTCTGGTTCATTCGACCAGCTT
CTCTGCCCGAGGATACCGAAGATTGGACGATTTTGAAGCAAGTGCAGCAG
GGTATCAGGGAGTTGAGATCATACTTGGGCATTGGACTGGCAATGGATCT
GCTCAATCCCTTGATGAAGCGAAACATGAAACTCTGGCGACCCAAGATGA
CAAGTTTCTTGGCGGGCTACATAGGATTGTTTAAGGTGGTTCAATTACTT
TTATTGAAAAGATTGAATGTAAATCAAGCCAATGCTCTGGCTTCCTTTAT
AAGCGGTTCGTCGTTTGCTCTTCTATCAAATCGTCTCACATTCATGTGTT
TTGCAATTGTAACTGCCATCCAGGTGATTTGGAGCCAGGTGTGCAATACT
AAAGATGAAAAGGATTCGGTTCTATCTGCAGTGCGAAAGATTCCCTGGGC
TAGACTGCTGATACCCTGTAGTCTGGCATACCTGGTGCACATTTTCTTCT
ACCACCAAAGGCATCTCAATGAGATGGCCCGGAGTTTCATAGACTGCACG
TGTGATAACATGGCCAACGATTGTTGAATCTGATAGGTCTTCCCAGTGTC
AATGCGATACTACAAGCTGTGGATAGGACACCTAAACTTCTTTTTGTTTG
CAAGCTTTCTAGAACAT
FMO14011.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31157-RD | 1324 | CG31157-RD | 209..1201 | 10..999 | 4890 | 99.7 | Plus |
| CG31157-RC | 1319 | CG31157-RC | 204..1196 | 10..999 | 4890 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13048312..13048647 | 252..587 | 1680 | 100 | Plus |
| 3R | 32079331 | 3R | 13048699..13049029 | 580..910 | 1640 | 99.7 | Plus |
| 3R | 32079331 | 3R | 13048017..13048260 | 10..253 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 13049081..13049156 | 911..986 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:04:13 has no hits.
FMO14011.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:01 Download gff for
FMO14011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31157-RC | 204..1199 | 10..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:58:10 Download gff for
FMO14011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31157-RC | 204..1199 | 10..1003 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:58:10 Download gff for
FMO14011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13048017..13048259 | 10..252 | 100 | -> | Plus |
| 3R | 13048313..13048645 | 253..585 | 100 | -> | Plus |
| 3R | 13048705..13049030 | 586..910 | 99 | -> | Plus |
| 3R | 13049081..13049167 | 911..996 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:01 Download gff for
FMO14011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8873739..8873981 | 10..252 | 100 | -> | Plus |
| arm_3R | 8874035..8874367 | 253..585 | 100 | -> | Plus |
| arm_3R | 8874427..8874752 | 586..910 | 99 | -> | Plus |
| arm_3R | 8874803..8874889 | 911..996 | 96 | -> | Plus |
