FMO14013.5prime Sequence
1083 bp (984 high quality bases) assembled on 2014-01-10
> FMO14013.5prime
TCAGTCGACATGGGCTTTCTATCGAAGGCTGCCTACATCGTGTGGGCCGT
CCTGTTCGAGCAGGAGATCATGGGCTTTGTTCCTATTGAAGAGCGCAGTC
CGCAGGGATCGCCGGTCCTCAACTCCCGGATGCCACAGCGTGCGCCGCCA
CCATTTCGCAGAGATTTCGAGGCCAAACTGCGCAGTTTCTATCGCAAACT
AGAGTCCAAGGGCTACGGACAAGGACCACACAAGCTTAAACTGCACATTC
GTCGCAGCCATTTGCTGGAGGACGCCTTCCGGCGCATCATGTCCGCCAAC
AAGAAGGACCTGCAACGCGGCCGACTCGCCGTGCTCTGGGATACGGAGGA
GGGCCTGGACTATGGCGGACCATCACGCGAGTTCTTCTTCCTACTTTCGC
GCGAACTGTTTAATCCGTACTACGGACTGTTCGAGTACTCAGCCAACGAT
ACGTACACCGTGCAGGTGTCACCATTGTCGGCGTTCGTGGATAATTGCCA
CGATTGGTTCCGCTTTAGTGGACGAGTTTTGGGATTGGCACTGGTACATC
AGTATCTACTGGACGCATTCTTTACGCGTCCCTTTTACAAGGCGCTGCTG
CGCCTGCCCGTGGCTCTCAGTGATTTGGAGTCGCTGGACAATGAGTTCCA
TCAGTCGCTCCAATGGATACGCGACAATGACATCGGCACGGGCGTGGATC
TTGGCCTAACGTTCTGTGTCACAGAGGAGCTGCTTGGCAGTGTGGTGGAC
AGGGAAACTGAAGCCCGGTGGCAAGAATATCATCATCAACGAGAAGAACA
AAAAGGAGTACTTGGAGCGCATGATTAAGTGGCGTCTGGAGCGCGGTGTT
CAGAGCAGACCGAGTCGCTGGTGCGCGGCTTTTACGAGGTGATCGACTCG
CGCCTCGTTTCGTCTTGATGCCCGAGAGTTGGAGCTGGTTATTGCCGGCA
CTGCAGAATAGACCCAAACGATTGGCGCCTGACACAGAGTATCGTTCTGG
TTACATGATAACCACAAGTGATCGTTGATCTGGCAGGTATCGAGCGCTTA
GCACCGAGCACGATCTTGTTCGTCTCAATTCCT
FMO14013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42797-RF | 2596 | CG42797-RF | 518..1578 | 10..1060 | 4960 | 98.5 | Plus |
| CG42797-RE | 6200 | CG42797-RE | 3361..4380 | 51..1060 | 4755 | 98.4 | Plus |
| CG42797-RC | 1954 | CG42797-RC | 192..1211 | 51..1060 | 4755 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9620593..9621373 | 240..1015 | 3545 | 99 | Plus |
| X | 23542271 | X | 9620343..9620531 | 51..239 | 945 | 100 | Plus |
| X | 23542271 | X | 9616575..9616615 | 10..50 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:04:46 has no hits.
FMO14013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:20 Download gff for
FMO14013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42797-RF | 511..1585 | 2..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:58:31 Download gff for
FMO14013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42797-RF | 511..1585 | 2..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:58:31 Download gff for
FMO14013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9620343..9620531 | 51..239 | 100 | -> | Plus |
| X | 9616568..9616615 | 2..50 | 91 | -> | Plus |
| X | 9620593..9621430 | 240..1067 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:20 Download gff for
FMO14013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9510601..9510648 | 2..50 | 91 | -> | Plus |
| arm_X | 9514376..9514564 | 51..239 | 100 | -> | Plus |
| arm_X | 9514626..9515463 | 240..1067 | 97 | | Plus |
