FMO14017.5prime Sequence
1077 bp (1008 high quality bases) assembled on 2014-01-10
> FMO14017.5prime
TCAGTCGACATGTCGCAGCTGCAACTGCTGCTCCTCGTCGCTTCGGCCTC
CGTGGTCCTCGCGGGATACAGCTCCTCCACCGACGAGTCGACGGACGCCT
CCAACTCCATTGGCGGCACCAAGTGCGACAAGAACCCGCTGAACGAACTG
ACCTTCCAGCTCAGCGGCAGCAGCCTCCACTGGCCCTGCGAGTCCACCAA
GAACATCTACGTCCAGTCCGGCCGCTATGTGCCCCGTAACGTGATCGTGA
CCCGGGCCCAACTGCAGCGGGACTCCGCCTTCGTGGCGCTGCCCAGGTAC
AAGCAGGGCGTGCCCTTCACTCTCGGCAAGGTCAATCTAAAGAAGGGCGA
GTGCCTGACCAAGATCGCACCCTATCCCTGCTGGGCCATTCAGGAGGAGG
GCAACTGCCAGGCGCTGCAGTCCGTCGTGGACATAGCCGTCGATCAGAAT
GGACTTCTGTGGGCCTTGGACGTGGGCATTGTCAACACCCTGGAGCAGCC
CATCCGCAGATGCAGTCCCAAGATCGTGGCCATAAACACGGCCAACCACA
AGGTGGTCAAGAGCATCGACCTCAGCGACCTGGTCACCTCCGAGAGTCGG
CTGCAGTTCATCGTGGTCGACTACTCCAAGGACAACAAGCCATTCGTCTA
TGTGGCCGATGCTGGAGCACGTAGTATCCTGGTATACGACATCACCGGCA
ACAAGTCCTACCGCATCGTCCTGCCGAAGGCCACCGCCCCCACCAGCGAT
GTGCTGTACGTGGCGCTCACCTCGAAGCCGGACGGCACCTCCACCCTGTT
CTTCAGCTACCTGAGCTCCCCCCGTCTGTACTCCATCAAGGGCGAGTACC
TGCGCGTTGGCCAGGGAGCGGGCTCCATCATCGACGTGGGCCCCAAGCCC
TTTGGCAACAGGCGGTGCTGCTGGGCGCCGAACGGCGGCACCTTCGCTCC
TTCTTCGGCTACAAGGGCAGAGAACGACTTTTACTGGGGGGACTCGGAGA
ACCTGCTTCCAAGGCCGCATCTGCAGAAGGTGCACGGGGAAAGCGACTGG
CTGTCTGTTCCATCCCAGTGGCTCCTC
FMO14017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-g-RA | 1344 | CG5717-RA | 79..1115 | 10..1049 | 4835 | 98.2 | Plus |
| yellow-g2-RA | 1431 | CG13804-RA | 379..504 | 370..495 | 210 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2272250..2272691 | 451..10 | 2210 | 100 | Minus |
| 3L | 28110227 | 3L | 2270110..2270508 | 1049..648 | 1445 | 95.1 | Minus |
| 3L | 28110227 | 3L | 2270943..2271139 | 647..451 | 985 | 100 | Minus |
| 3L | 28110227 | 3L | 2276928..2277053 | 370..495 | 210 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:04:57 has no hits.
FMO14017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:25 Download gff for
FMO14017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g-RA | 79..1115 | 10..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:58:39 Download gff for
FMO14017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g-RA | 79..1115 | 10..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:58:39 Download gff for
FMO14017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2270110..2270508 | 648..1049 | 95 | <- | Minus |
| 3L | 2270943..2271139 | 451..647 | 100 | <- | Minus |
| 3L | 2272251..2272691 | 10..450 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:25 Download gff for
FMO14017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2270110..2270508 | 648..1049 | 95 | <- | Minus |
| arm_3L | 2270943..2271139 | 451..647 | 100 | <- | Minus |
| arm_3L | 2272251..2272691 | 10..450 | 100 | | Minus |
