FMO14018.5prime Sequence
860 bp (860 high quality bases) assembled on 2014-01-10
> FMO14018.5prime
TCAGTCGACATGACGCAGGACATGCTGCTGGGCAACGAGGAGCCGAGCAA
GAGCAAGGAGACGTTCCTGGAGAAGTTCTGTGTCCTGGCCAAGTCATCCA
CCGGCGCCGCTTTGCTGGATGTGATTCGCCAGGCCCTGGAAGCCCCGAAT
GTCTTTGTTTTTGGCGAATTACTGGCGGAGCCATCCGTTTTGCAGCTTAA
AGACGGTCCGGACTCCAAGCACTTCGAGACCCTGAACCTATTCGCATACG
GCACATACAAGGAATACCGTGCACAGCCGGAAAAGTTCATCGAGCTGACT
CCTGCCATGCAGAAGAAGCTGCAGCACCTGACTATCGTCTCGCTGGCCAT
TAAAGCAAAGAGCATTCCCTATGCCCTGCTGCTCAGCGAACTGGAGATCG
ACAACGTCCGCCACTTGGAGGATATCATCATAGAGGCCATCTACGCGGAC
ATCATCCACGGAAAGCTGTTCCAGAACACACGAATTTTGGAAGTGGACTA
CGCCCAGGGCCGCGACATTCCGCCCGGATACACTGGCCAGATCGTGGAAA
CCCTTCAGGCGTGGGTCAACTCCTGCGACAGCGTTTCCAATTGCATCGAA
ATGCAGATTAAGTACGCGAATGCCGAGAAATCTAAAAGGCTGATTAACAA
AGAGCGCGTGGAACAAGATCTCATCAATCTTAAGAAGGTTTTAAAGAGCC
AGACCTCGGATAGCGATGAGAGCATGCAAATCGACACCCACGGACCGGGA
ACCAGTGGCGGACTGGGTCAATCGGAGCTAAAGAAGAAGCCCTCCAAGCT
GAGGATCCACGCAGCGCGGCAGTGGGCCTCAAGTTTAGCAAGGCAAGCTT
TCTAGACCAT
FMO14018.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN7-RA | 1186 | CG2038-RA | 79..912 | 10..842 | 4130 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8421355..8421609 | 194..448 | 1275 | 100 | Plus |
| 2R | 25286936 | 2R | 8427573..8427799 | 443..669 | 1120 | 99.6 | Plus |
| 2R | 25286936 | 2R | 8421111..8421296 | 10..195 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 8427993..8428146 | 670..822 | 705 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:05:00 has no hits.
FMO14018.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:26 Download gff for
FMO14018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN7-RA | 71..912 | 1..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:58:41 Download gff for
FMO14018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN7-RA | 71..912 | 1..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:58:41 Download gff for
FMO14018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8421103..8421296 | 1..195 | 97 | -> | Plus |
| 2R | 8421357..8421609 | 196..448 | 100 | -> | Plus |
| 2R | 8427579..8427799 | 449..669 | 100 | -> | Plus |
| 2R | 8427993..8428146 | 670..822 | 98 | -> | Plus |
| 2R | 8428284..8428303 | 823..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:26 Download gff for
FMO14018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4308608..4308801 | 1..195 | 97 | -> | Plus |
| arm_2R | 4308862..4309114 | 196..448 | 100 | -> | Plus |
| arm_2R | 4315084..4315304 | 449..669 | 100 | -> | Plus |
| arm_2R | 4315498..4315651 | 670..822 | 98 | -> | Plus |
| arm_2R | 4315789..4315808 | 823..842 | 100 | | Plus |
