FMO14025.5prime Sequence
1109 bp (943 high quality bases) assembled on 2014-01-10
> FMO14025.5prime
TCAGTCGACATGGAAACCGTGGTTGCCTTCAACAATGAGCTCTCCGGACT
CTATGACAGCCGACCGCCCATTTCCAAAGCGAAGATGGCCGCCATCACCA
AGTCGGCGATGCGGGCCATCAAGCTGTATAAGCACGTCGTCCAGAGTGTG
GAGAAGTTCATCTTGAAGTGCAAGCCGGAGTACAAAGTACCCGGGCTGTA
TGTAATCGACTCGATAGTGCGCCAGTCGCGCCACCAGTACGGTATGGACA
AGGATCTGTTCGCGCCCCGATTCCAGCGTAATCTCACGGAGACCTTTGCC
AACTTGTTCCGGTGCGCTCCGGAGGACAAGAGTCGCATCATCCGGGTACT
GAACCTGTGGCAGAAAAACAACGTCTTCAAGTCCGAGGTCATTCAGCCGA
TCTTCGACCTGGCCGACCCAAACCACCCAATCTACCACCAGATGCCTCCG
GTGGGTGGCAGTGGAGGACAGGGCGGCGGCGTGGGTCCAGGACCCAGCAG
CAGCGGTGCTCTTAGCCTGGCGGACATATCGAGCGGTCCGAACGGTCTAA
ACAGCTCCGGAATGGAGATAAGCATGAACAGCTCCGGGGGCGACGATAAG
ATGGGCGGTGCCATGCCCGACTTGTCGCTGGGCCATGAGAAGTTCGGCGG
TGGCAGCAGCAGCTCCAAGCGTCACTACTCGGAGCAACACTATTCCAAAC
GACAGTCGGTGGTCTCGTGCTCGTCGAAGACCAGCAAGTCGCATCATCAC
AAACGGGAATATGTCAAGAGCTCGCACGACATTGACTACCAGGTGCGGGA
GATCATCGAGGAAGAGGATGAAGGCCTGCAGATGCTGATGGCAGATGATC
ACCACTGTATGGGCGACGACTCACGGCCCACTTCTTCAAACCTGTTAGAC
GAGAAGGAAGATCAATGCAGGTGCTAAACAATTCGAATGTGCTGCGGCAG
CTCTACGCTGCGAAACTTCCATATTTGGAGGCCGCAGGAGGAAAACCAAA
AGCATCGCTATCAGGCCAGAGGCACTGGAGCAGCATTTCCAAAGGGAAGA
AAGGGAAAAGGCGGTTGCCCTCGGGCTGGGTAGGGGCTGAACATGAACGG
AAGCTTAGT
FMO14025.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4266-RC | 4346 | CG4266-RC | 197..1291 | 8..1099 | 4900 | 96.9 | Plus |
| CG4266-RB | 4662 | CG4266-RB | 197..1291 | 8..1099 | 4900 | 96.9 | Plus |
| CG4266-RD | 4380 | CG4266-RD | 197..816 | 8..627 | 3100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21167596..21168185 | 627..38 | 2950 | 100 | Minus |
| 2R | 25286936 | 2R | 21167171..21167445 | 901..627 | 1345 | 99.3 | Minus |
| 2R | 25286936 | 2R | 21166903..21167028 | 1041..917 | 340 | 88.2 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:05:19 has no hits.
FMO14025.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:37 Download gff for
FMO14025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4266-RB | 189..1298 | 1..1109 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:58:55 Download gff for
FMO14025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4266-RB | 189..1298 | 1..1109 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:58:55 Download gff for
FMO14025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21167172..21167444 | 628..900 | 99 | <- | Minus |
| 2R | 21167596..21168183 | 40..627 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:37 Download gff for
FMO14025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17054677..17054949 | 628..900 | 99 | <- | Minus |
| arm_2R | 17055101..17055688 | 40..627 | 100 | <- | Minus |
