FMO14026.5prime Sequence
519 bp (519 high quality bases) assembled on 2014-01-10
> FMO14026.5prime
TCAGTCGACATGTGGGCATTCTGGGTTGGATTATCTATAGCCTTTGCCAT
ATTTTTCATTACTTCCTTCGTTGTTTGCATTAGACGCAGGCAGAAAGCAG
CGCGAAATGTTGGCTACACAATCAGCGAAGGCGTTGCGCCTGTGGTGGTG
ACCTCCGCCACCCACACGGCTCCCGGCGGATATCCGGTCACACAGCTGCC
TCCGCCGGGCTATCCATCGAGCAATGCCTACGTAACTGCGACCTCGTACC
CCGTACAGACCACCGGCAACGTGACTGTGCAGATGCCCATGCCGATGAGC
CACCAGAACCAGCAGCAAATGCCAATGCCTATGCCGATGCCGGGTCAGCA
AACGCATGGCGTGGCGTATCCGACGTATCCTGGCGCCGGGGCTGCCAACA
TGAATCCGCCGCCGTATGACATGTCCATGGCTAATCCAGGACCTAGTGTT
ATGCCCGCTGGATATGAGAAGCAAGCTCCCTACAATCCCCACTTTGGCCA
GGCAAGCTTTCTAGACCAT
FMO14026.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17574-RG | 921 | CG17574-RG | 48..539 | 10..501 | 2460 | 100 | Plus |
| CG17574-RK | 841 | CG17574-RK | 94..459 | 136..501 | 1830 | 100 | Plus |
| CG17574-RI | 965 | CG17574-RI | 218..583 | 136..501 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12849740..12849897 | 501..344 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 12850099..12850229 | 266..136 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 12850775..12850901 | 136..10 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 12857433..12857559 | 136..10 | 620 | 99.2 | Minus |
| 2R | 25286936 | 2R | 12849961..12850039 | 344..266 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:05:23 has no hits.
FMO14026.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:39 Download gff for
FMO14026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17574-RG | 39..543 | 1..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:58:56 Download gff for
FMO14026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17574-RG | 39..543 | 1..505 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:58:56 Download gff for
FMO14026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12849735..12849896 | 345..505 | 98 | <- | Minus |
| 2R | 12849961..12850038 | 267..344 | 100 | <- | Minus |
| 2R | 12850099..12850228 | 137..266 | 100 | <- | Minus |
| 2R | 12850775..12850907 | 1..136 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:39 Download gff for
FMO14026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8737240..8737401 | 345..505 | 98 | <- | Minus |
| arm_2R | 8737466..8737543 | 267..344 | 100 | <- | Minus |
| arm_2R | 8737604..8737733 | 137..266 | 100 | <- | Minus |
| arm_2R | 8738280..8738412 | 1..136 | 97 | | Minus |
