Clone FMO14038 Report

Search the DGRC for FMO14038

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:140
Well:38
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG18769-RG
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO14038.5prime Sequence

1144 bp (1013 high quality bases) assembled on 2014-01-10

> FMO14038.5prime
TCAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCTTTCGGCT
CTTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCCCTGCGTT
TGGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCATGAGCTT
CAGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAACGGACAA
GCATAAAAAACCGACGACGGGAGATATCACGCGACTCACTTTGGCCGAGC
TGAGGACGCGGCTAAAAGCCCTCGGACTGAGTGCAGCGGGCCGAAAACAA
GTCCTAGTTGAACGGCTAACAAGATCTACTACCTGCAGTGCCACAACGTT
GCCAAGAACAACAGGTTCCAATTTGTCGCCGGAGGTGTTCATTGGGGGGC
TCGTAAATAATTCCAACACGACCTCTGAACCCAAAAACACTGTTCAACAA
AATGAAGACATCTATGTGGAATACGTGAATGGCATGCCACACATGACTGT
ACGACTTCCCAGTCGCAATGAACTCTGCCAGTTTGCCCTGAAACCCATCT
CCCACAACGTTGGTGATCTGTTAGCCATGCTCAGGGCTGAGGATCGGGGC
ATCGATCGAGCTGCGGTGATCAACAAGCATGGTGTGCGAATCGCGTCGTC
CTGCACCATCGAAAGCTTGCTGGATGACTCGTTTAGCATACAAATCAACA
ATCGCACATTGGATGTGAATCCTCCCAAACGTGACAAAGTCACATTGGAG
TCCATGGACAAAGTGGGCGATGTTCGTAAAGGTTATTGCTCAGCTCTACG
AGGCATTCAACGTCGGAGAATATCAGCTGGAGAAGAGCAATCAATTGGCC
AAGAACTGGAGACCCTACGCTATGAACTAGACCACTGGAGAGAAAAACTG
GAACTCAGCAAAAGGCCGCTCGTCGCACTACTTTATGACTTGGATGGGTT
TGGGCCTATGTCGGTGCATTTGGCCATTTTGGCACGACTGACTTGGTGGG
AATACTCTTGGGATATTATGGAACCGTTACTATTTTTGTAACTACGGGAC
GACAATGGCATGTATGGCCTCACTATTGTGTCCTAAAAGGATAATTGATG
GGAGGAAGTGAGAATCCGAATTCCTCCTTCCTAAGACGCAAGGA

FMO14038.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-RG 1961 CG18769-RG 201..1326 9..1123 5020 97.5 Plus
CG18769-RH 2003 CG18769-RH 685..1368 451..1123 2810 95.9 Plus
CG18769-RE 1543 CG18769-RE 228..908 454..1123 2795 95.9 Plus
CG18769-RH 2003 CG18769-RH 201..415 9..223 1075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6587162..6587394 222..454 1165 100 Plus
3L 28110227 3L 6590603..6590835 454..686 1165 100 Plus
3L 28110227 3L 6551832..6551949 9..126 590 100 Plus
3L 28110227 3L 6591215..6591387 893..1060 510 93.1 Plus
3L 28110227 3L 6590891..6590999 684..793 500 99.1 Plus
3L 28110227 3L 6562321..6562418 126..223 490 100 Plus
3L 28110227 3L 6591055..6591147 790..881 415 98.9 Plus
Blast to na_te.dros performed on 2014-11-29 00:05:45 has no hits.

FMO14038.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:49 Download gff for FMO14038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-RG 193..1294 3..1095 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:10 Download gff for FMO14038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-RG 193..1294 3..1095 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:10 Download gff for FMO14038.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6590604..6590835 455..686 100 -> Plus
3L 6590894..6590999 687..793 99 -> Plus
3L 6591059..6591160 794..892 97 -> Plus
3L 6591214..6591420 893..1093 91   Plus
3L 6587164..6587394 224..454 100 -> Plus
3L 6551824..6551949 3..126 97 -> Plus
3L 6562322..6562418 127..223 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:49 Download gff for FMO14038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6544924..6545049 3..126 97 -> Plus
arm_3L 6555422..6555518 127..223 100 -> Plus
arm_3L 6580264..6580494 224..454 100 -> Plus
arm_3L 6583704..6583935 455..686 100 -> Plus
arm_3L 6583994..6584099 687..793 99 -> Plus
arm_3L 6584159..6584260 794..892 97 -> Plus
arm_3L 6584314..6584520 893..1093 91   Plus