FMO14038.5prime Sequence
1144 bp (1013 high quality bases) assembled on 2014-01-10
> FMO14038.5prime
TCAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCTTTCGGCT
CTTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCCCTGCGTT
TGGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCATGAGCTT
CAGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAACGGACAA
GCATAAAAAACCGACGACGGGAGATATCACGCGACTCACTTTGGCCGAGC
TGAGGACGCGGCTAAAAGCCCTCGGACTGAGTGCAGCGGGCCGAAAACAA
GTCCTAGTTGAACGGCTAACAAGATCTACTACCTGCAGTGCCACAACGTT
GCCAAGAACAACAGGTTCCAATTTGTCGCCGGAGGTGTTCATTGGGGGGC
TCGTAAATAATTCCAACACGACCTCTGAACCCAAAAACACTGTTCAACAA
AATGAAGACATCTATGTGGAATACGTGAATGGCATGCCACACATGACTGT
ACGACTTCCCAGTCGCAATGAACTCTGCCAGTTTGCCCTGAAACCCATCT
CCCACAACGTTGGTGATCTGTTAGCCATGCTCAGGGCTGAGGATCGGGGC
ATCGATCGAGCTGCGGTGATCAACAAGCATGGTGTGCGAATCGCGTCGTC
CTGCACCATCGAAAGCTTGCTGGATGACTCGTTTAGCATACAAATCAACA
ATCGCACATTGGATGTGAATCCTCCCAAACGTGACAAAGTCACATTGGAG
TCCATGGACAAAGTGGGCGATGTTCGTAAAGGTTATTGCTCAGCTCTACG
AGGCATTCAACGTCGGAGAATATCAGCTGGAGAAGAGCAATCAATTGGCC
AAGAACTGGAGACCCTACGCTATGAACTAGACCACTGGAGAGAAAAACTG
GAACTCAGCAAAAGGCCGCTCGTCGCACTACTTTATGACTTGGATGGGTT
TGGGCCTATGTCGGTGCATTTGGCCATTTTGGCACGACTGACTTGGTGGG
AATACTCTTGGGATATTATGGAACCGTTACTATTTTTGTAACTACGGGAC
GACAATGGCATGTATGGCCTCACTATTGTGTCCTAAAAGGATAATTGATG
GGAGGAAGTGAGAATCCGAATTCCTCCTTCCTAAGACGCAAGGA
FMO14038.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-RG | 1961 | CG18769-RG | 201..1326 | 9..1123 | 5020 | 97.5 | Plus |
CG18769-RH | 2003 | CG18769-RH | 685..1368 | 451..1123 | 2810 | 95.9 | Plus |
CG18769-RE | 1543 | CG18769-RE | 228..908 | 454..1123 | 2795 | 95.9 | Plus |
CG18769-RH | 2003 | CG18769-RH | 201..415 | 9..223 | 1075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6587162..6587394 | 222..454 | 1165 | 100 | Plus |
3L | 28110227 | 3L | 6590603..6590835 | 454..686 | 1165 | 100 | Plus |
3L | 28110227 | 3L | 6551832..6551949 | 9..126 | 590 | 100 | Plus |
3L | 28110227 | 3L | 6591215..6591387 | 893..1060 | 510 | 93.1 | Plus |
3L | 28110227 | 3L | 6590891..6590999 | 684..793 | 500 | 99.1 | Plus |
3L | 28110227 | 3L | 6562321..6562418 | 126..223 | 490 | 100 | Plus |
3L | 28110227 | 3L | 6591055..6591147 | 790..881 | 415 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:05:45 has no hits.
FMO14038.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:49 Download gff for
FMO14038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RG | 193..1294 | 3..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:10 Download gff for
FMO14038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RG | 193..1294 | 3..1095 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:10 Download gff for
FMO14038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6590604..6590835 | 455..686 | 100 | -> | Plus |
3L | 6590894..6590999 | 687..793 | 99 | -> | Plus |
3L | 6591059..6591160 | 794..892 | 97 | -> | Plus |
3L | 6591214..6591420 | 893..1093 | 91 | | Plus |
3L | 6587164..6587394 | 224..454 | 100 | -> | Plus |
3L | 6551824..6551949 | 3..126 | 97 | -> | Plus |
3L | 6562322..6562418 | 127..223 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:49 Download gff for
FMO14038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6544924..6545049 | 3..126 | 97 | -> | Plus |
arm_3L | 6555422..6555518 | 127..223 | 100 | -> | Plus |
arm_3L | 6580264..6580494 | 224..454 | 100 | -> | Plus |
arm_3L | 6583704..6583935 | 455..686 | 100 | -> | Plus |
arm_3L | 6583994..6584099 | 687..793 | 99 | -> | Plus |
arm_3L | 6584159..6584260 | 794..892 | 97 | -> | Plus |
arm_3L | 6584314..6584520 | 893..1093 | 91 | | Plus |