FMO14040.5prime Sequence
881 bp (881 high quality bases) assembled on 2014-01-10
> FMO14040.5prime
TCAGTCGACATGTCGCAACAGCGCTCCACAGAGCAGATTGCAGCTAGCAA
CAACAACACCAGCGATGTAATAGCGCTGGACGACGACGAGGATACGGATG
TGCAATTCGTTGCAGCTCTGCGTCCCACCGCACCAGTCATCGATCTTTGC
GTCTCGCCCTCCACTTCTGCTGCTGCTGCTGCGGCGGCGGCAGCTGCAGC
CCACTCAGGAGGCGGAAGTGGCGAGGATCCGGCGGTTGGATCCGCATCTG
GAGCTGCTGCTTCGGATACCGATTCACTTGCTTCTTCGCCTGACGAAGGA
GCGTTAGCCACCGGTGTGGATGCAGCGGCAGCCGTTTCTGGCGAAGATTC
CCCCTCTGCAGCGGCCGCTGCCTTGGAGTGTCCCATCTGTTTGCAAACCT
GCATCCACCCAGCTCGTCTCCCCTGTGGCCACATCTTCTGCTTTTTGTGC
GTGAAGGGTGTTGCTTATAAGAACCGCCGTTGTGCTATGTGCCGTCGCGA
GATTCCCGCCGAGTTCCTGGACCATCCCCAGCTGGTGAATGGCATTGAGG
ACATCTGCACCACTCGCGCGACCGAGGACGGCTTCCAGTGGTATTACGAG
GGAAAGAAACGGGGGCTGGTGGGCGTACGATTCTCGGACCAATGCAGACA
TCGAGATCGCCTATGCTGGCTTTGAGATATTCAAGGCAGATAACCCCTGA
GCTTGCTCCTTTTATTTGATCGGGACTGTCCAAACCCTATCAATCACTAT
TGTCTGTGTGACGAAAATAATATTTTTCTACAATGCCGATTCAGAAATTT
GTTATATACCCAACCATTATTCGTTCTCTGGTCAGGGCGCTCCAGCCTCT
TTCCGAAAACATGGGCCGGGACTCCCCACCC
FMO14040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8786-RF | 1376 | CG8786-RF | 149..1013 | 9..878 | 4105 | 98.6 | Plus |
| CG8786-RG | 3862 | CG8786-RG | 149..751 | 9..612 | 2995 | 99.8 | Plus |
| CG8786-RC | 1667 | CG8786-RC | 149..751 | 9..612 | 2995 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19642352..19642668 | 325..9 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 19640722..19640985 | 878..611 | 970 | 95.9 | Minus |
| 3L | 28110227 | 3L | 19641071..19641220 | 604..455 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 19641893..19642026 | 457..324 | 670 | 100 | Minus |
Blast to na_te.dros performed 2014-11-29 00:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2467 | 333..168 | 112 | 53 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2864 | 261..161 | 110 | 59.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1096 | 199..164 | 108 | 77.8 | Minus |
FMO14040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:53 Download gff for
FMO14040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RF | 138..1016 | 1..881 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:13 Download gff for
FMO14040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RF | 138..1016 | 1..881 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:13 Download gff for
FMO14040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19640718..19640984 | 612..881 | 95 | <- | Minus |
| 3L | 19641065..19641218 | 457..611 | 99 | <- | Minus |
| 3L | 19641894..19642024 | 326..456 | 100 | <- | Minus |
| 3L | 19642352..19642674 | 1..325 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:53 Download gff for
FMO14040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19633818..19634084 | 612..881 | 95 | <- | Minus |
| arm_3L | 19634165..19634318 | 457..611 | 99 | <- | Minus |
| arm_3L | 19634994..19635124 | 326..456 | 100 | <- | Minus |
| arm_3L | 19635452..19635774 | 1..325 | 98 | | Minus |
