FMO14045.5prime Sequence
1006 bp (932 high quality bases) assembled on 2014-01-10
> FMO14045.5prime
TCAGTCGACATGCACCGCCTACCCTGGAAGTGGGCGTGGCTGCCACTGCT
GCTACTAATTACTGCGAAATTGGAGCAGGTGGGCGGCAAAACATATCTGG
ATTGGGCGCGCACCGATAGTCAGCTAACGAGACTACCATTCTTTGGCGGC
GGTGTGGGTCACCTGCTGCGATATCTGCACCCATTGTCGATGAGTCCCCC
ATCCGAACGCGGCAAAATCTCGGAGCTACGCAGCGAATTGGATGCCAACT
ATGTGAGCTACCGTGGTGCGCAGCTCTGGAAGCTGAACTTCAATGCCACC
CGGGGCTCGTCCATGGCGGAGCGGGAGGAGGACGATGAGGCGGCTGAGAA
GCGACAGGTGCTGGCTTCACCGGATGCCCAATTCAATGAGGTGGTCGCAT
TATTCGGCAGCGAGGTGTGGAATATCAACCAGGATGGCATCGACATCCTC
ATCGAGCAACGCAATGTAGCCGATGCACGAAAGTTCATGGACAAGGTGGG
CTACAGCTACAACATAATGATCGATGACATCGAGTCGGCGATCGATGAGA
GCTACGTGGAAGTTCCGGCCGTGGAACATCCATTGGATTCCGTGCGCAAC
AATTCGCTGCCATGGATGGAAGTGCCGGGTTCAACGATGAACTGGCGGCG
TTACCACGATCAGGCGGACATTAAGCAGTTCCTGCAGACGCTGCTCGAAA
CCTACTCGGAAAATGTGGAACTAATCCAGATAGGGGTCACGCGCAACAAG
CGACCGCTGGAGGTCATCAGGTCTCCAATGGGAATCCGGGACAATTGGCG
GTGTTCGTGGATGCTGGACTGCAGGCCAGGGATTGTTAAGTCCTGCCGCC
CTCACTTACGCCATATCCAAGCTACCCATCTCTGGGCAGCCAAAGGCAAG
GACAGGTGATGTCAGAGCAGAGCAGAGCGGAGAGCGATGCGCCGCATCGA
TTGTACTTCTTGCATTTGCAATCCAGATGCTACCAGTAATTCCCGCCCAG
ACGGAT
FMO14045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42264-RB | 1748 | CG42264-RB | 69..1079 | 10..1006 | 4530 | 97.6 | Plus |
| CG42264-RA | 2087 | CG42264-RA | 804..1418 | 406..1006 | 2550 | 96.1 | Plus |
| CG42264-RA | 2087 | CG42264-RA | 69..465 | 10..406 | 1985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5776182..5776579 | 407..10 | 1990 | 100 | Minus |
| X | 23542271 | X | 5774004..5774370 | 772..406 | 1835 | 100 | Minus |
| X | 23542271 | X | 5773823..5773941 | 886..770 | 420 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:06:03 has no hits.
FMO14045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:00 Download gff for
FMO14045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42264-RB | 62..1053 | 2..979 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:20 Download gff for
FMO14045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42264-RB | 62..1053 | 2..979 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:20 Download gff for
FMO14045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5773718..5773941 | 771..979 | 91 | <- | Minus |
| X | 5774006..5774369 | 407..770 | 100 | <- | Minus |
| X | 5776183..5776586 | 2..406 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:00 Download gff for
FMO14045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5667751..5667974 | 771..979 | 91 | <- | Minus |
| arm_X | 5668039..5668402 | 407..770 | 100 | <- | Minus |
| arm_X | 5670216..5670619 | 2..406 | 99 | | Minus |
