Clone FMO14046 Report

Search the DGRC for FMO14046

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:140
Well:46
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG4004-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO14046.5prime Sequence

329 bp (234 high quality bases) assembled on 2014-01-10

> FMO14046.5prime
TCAGTCGACATGTCGGACCACGCATTTATCGCCGAGCAGATTGCAAGTGG
CCTTTACTCCTTGGAGCCCAAGCTCAAGGGAAAGAGTTTCGTCTGGAATG
TTTTAAGCGGGATTATTAAGGATGATGGATCAATTTTAAACGACTTGGTT
TACTGCCGCTCATGTCGAAAAATTCCTAAAATGTGTTGGCAATCAAACTT
CAAATTTAGCCAGGCACAAAATGTTGTCAATCTTTTCGGCAACCAACTGC
CCTACGGATTGGGTCTGCTCCAGACAAAAAGGAGGCGTTGAATGCGTTTC
CAGTGGATGGCGAAGGACGGCCGCCGTTT

FMO14046.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-RC 1288 CG4004-RC 56..377 10..329 1455 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12746372..12746686 10..323 1370 97.8 Plus
2R 25286936 2R 1093327..1093544 76..295 790 92.7 Plus
2L 23513712 2L 20220564..20220793 296..61 730 90.3 Minus
2R 25286936 2R 1278158..1278195 113..76 190 100 Minus
Blast to na_te.dros performed on 2014-11-29 00:05:36 has no hits.

FMO14046.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:46 Download gff for FMO14046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4004-RC 49..377 1..329 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:04 Download gff for FMO14046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4004-RC 49..377 1..329 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:04 Download gff for FMO14046.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12746365..12746654 1..293 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:46 Download gff for FMO14046.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12640398..12640687 1..293 97 -> Plus