FMO14047.5prime Sequence
880 bp (880 high quality bases) assembled on 2014-01-10
> FMO14047.5prime
TCAGTCGACATGCAGGCGATTGCGTTTCACAAACTGTTACTACTGCTTCC
GCTGGCGTTTTATCAATCAACAAATGGTATGGAGTGGAATTACCTGAAGA
ATGGCAAGGATTGGGAGGACCTCTGCTCCTCCGGAAAACACCAATCGCCG
ATTTTGTTGGATTCTAGAACGGCGCGCAAGTGGGTCTTACCTGGGATCAC
TTTCTGGCATTATTATAGGCTGCTTAAGCGTCCGTTTTACATCAGAAACA
ATGGGCACTCCATTAGCTTGGACATTCCCGTGACGAGCAATGGAAGGAAG
CCCTTCATAACCGGCGGCCGTTTGAAGGGTCGTTACTATGCCGATGGACT
TCACTTCCATTGGGGGTCCTACAAATCCCGCGGATCCGAGCACTTGATTA
ACAAGCGCCGATTCGACGCAGAAATCCATATTGTCCATCGGAACGAGAAG
TACAGAAATATTGCACAAGCCGTCCGTCAGAAAGATGGTTTGGCTGTTGT
CGCAATCATGGTGGCTATTAAGGACAATGCGAAATCCACACCTTTGTCCA
GGCTCATGGAGGCAGTCGTACGGGTGCCGATCGAAGACTCGAACGCCACT
GTTTTTGGCCAATCAAGCTTGGATCAGTTGATCGGAGGTGTGAGTCACAG
GGACTTCTTCACCTACGAGGGCTCACTGACCACGCCCCTCTGCGACGAGA
CTGTCACCTGGATTGTTTTCACCGAGACTACGACTGTCACCATGTCATCC
GTCTCAAAGTTTTGGCTGTGCGAGACCACTGGGGCCACAAGGCTGATCAA
CAATTTATCGGATTGTCCAAGATCTAAACAATCGCACTGTGTTCTATAAG
AAGAGAATGTCAGCAAGCTTTCTAGACCAT
FMO14047.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18672-RB | 1036 | CG18672-RB | 161..1012 | 10..862 | 4195 | 99.6 | Plus |
| CG18672-RC | 1042 | CG18672-RC | 161..1018 | 10..862 | 4125 | 99 | Plus |
| CG18672-RD | 1027 | CG18672-RD | 161..1003 | 10..862 | 4050 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31261302..31261643 | 520..862 | 1570 | 99.1 | Plus |
| 3R | 32079331 | 3R | 31260982..31261238 | 263..519 | 1285 | 100 | Plus |
| 3R | 32079331 | 3R | 31260669..31260765 | 76..172 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 31260829..31260924 | 171..266 | 465 | 99 | Plus |
| 3R | 32079331 | 3R | 31260407..31260476 | 10..79 | 350 | 100 | Plus |
| 3R | 32079331 | 3R | 31259200..31259300 | 352..452 | 205 | 80.2 | Plus |
| 3R | 32079331 | 3R | 10118874..10118949 | 653..728 | 185 | 82.9 | Plus |
| 3R | 32079331 | 3R | 31259784..31259856 | 640..712 | 185 | 83.6 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:05:38 has no hits.
FMO14047.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:22:47 Download gff for
FMO14047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18672-RB | 153..1015 | 1..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:07 Download gff for
FMO14047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18672-RB | 153..1015 | 1..866 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:07 Download gff for
FMO14047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31260399..31260473 | 1..76 | 94 | -> | Plus |
| 3R | 31260670..31260764 | 77..171 | 100 | -> | Plus |
| 3R | 31260830..31260920 | 172..262 | 100 | -> | Plus |
| 3R | 31260982..31261238 | 263..519 | 100 | -> | Plus |
| 3R | 31261302..31261646 | 520..866 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:22:47 Download gff for
FMO14047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27086121..27086195 | 1..76 | 94 | -> | Plus |
| arm_3R | 27086392..27086486 | 77..171 | 100 | -> | Plus |
| arm_3R | 27086552..27086642 | 172..262 | 100 | -> | Plus |
| arm_3R | 27086704..27086960 | 263..519 | 100 | -> | Plus |
| arm_3R | 27087024..27087368 | 520..866 | 98 | | Plus |
