FMO14050.5prime Sequence
378 bp (184 high quality bases) assembled on 2014-01-10
> FMO14050.5prime
TCAATCGACATGCGGTTCGGCAGAATTGATGTGACAGAGGCTCAGTTCTC
AATTATAGCCATTCATTTGGTTTCGGCTGCACTGGGTCCTGAGATCTGGC
TCACCAAGATACCAATCGTGGGCCTTTCATGGAATTACACAATATTAGTA
TTTATCACATTCGGTTATACCTTGAATATAATCAATTTCCTAAAAATGTT
TACTCAAGGCGGCAGTGGCAAAAACGGCTCCTCAGTTGCTGGCACCAGTG
TCCTCTCGCCCAGCATTCCGCTCACGCTGGTGGTGCTGCCCGCCCTGATG
ATTGCCCAAAATCACCGCATAACTCCTCACCAAAACGCTCGGTGTAATAT
GGCGTCGGATGGTGGCCCCAGGTCCCAT
FMO14050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bbc-RA | 2031 | CG6016-RA | 914..1279 | 10..367 | 1540 | 96.2 | Plus |
| bbc-RB | 2579 | CG6016-RB | 914..1014 | 10..110 | 505 | 100 | Plus |
| bbc-RE | 1899 | CG6016-RE | 914..1012 | 10..108 | 495 | 100 | Plus |
| bbc-RB | 2579 | CG6016-RB | 1120..1279 | 216..367 | 465 | 89.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13489741..13489875 | 241..107 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 13491435..13491533 | 108..10 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 13488065..13488132 | 308..241 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:06:18 has no hits.
FMO14050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:08 Download gff for
FMO14050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbc-RA | 905..1228 | 1..323 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:28 Download gff for
FMO14050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbc-RA | 905..1228 | 1..323 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:28 Download gff for
FMO14050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13489742..13489873 | 109..240 | 100 | <- | Minus |
| 2R | 13491435..13491537 | 1..108 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:08 Download gff for
FMO14050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9377247..9377378 | 109..240 | 100 | <- | Minus |
| arm_2R | 9378940..9379042 | 1..108 | 95 | | Minus |
