FMO14051.5prime Sequence
1123 bp (995 high quality bases) assembled on 2014-01-10
> FMO14051.5prime
TCAGTCGACATGGCCAAAATCGTACTCTTCTGCCTGCTGAGCCTCTTGGC
ATGCGCTGCAGGTCAACGCATTACGACAATCCACCTGGATGGAGTGCAGT
ACTTCATCAGCCGAATGAATCCCTACTCCCCGGAGCTCAACTACTTCCTG
GCCTACCAGTACTGTCGCTCCCTGGGCCTGCAACTGGCCTCCTTTGAGAC
GAAGGAGAAGGCCGAGTCGATGACCACGTATCTGAAGAATGCCGGTTACG
GCAACTACGATTTCTGGACCTCCGGCAATCGCCTGGGCACGGGCATGTTC
CTATGGATGAGCACTGGTCTGCCGTTTAACGCCACTTTTGATTTCTTCGA
AAACTCGGCGGACGCCATCCAGGCCGGTCTGCTCGATCCCGTCGATCATA
ATAGCAACACCTCACCCCAGCGCACCGCTCGCGACAGCAGCAGTGGCGCC
GAGAAGGGATGCGTGATCCTGAAGCAGCCCACGCTCAAGTGGATGCCCGA
GGACTGCTCGGCCGTGAAGGACTTCATTTGTGAGCAGACCCGCTGCTACT
ACTACAACTACGGCAGCATCCCCGTCTCGTCGGCGCAGGGACGTCCCATC
ACCTCCACCACCCCAAGGACTCCTGCCTCCCTGATGAACCTGCATGTGGC
CGCCACCACCACACCCTTGCCCCTGCTGATGTCCACCAGTGGAGCAATGT
ACACCGCTGCCAAGGCCAAATCTTCGCCAGCCGTTGGCCACCGACTGATC
GATGATTCCAGCTCCCAGCAGCACCCTCGTTTATGTCCTTTAAGCTGAAA
CCATGATCGCTCGCTGCCCGATACGGATTCACTGACGTGGATGTGGAGGA
TCAGGAAGCGGATTTGGATGGCGAGGAGCACGATGACCATGAGGCCGAGG
GCGAAGAGGAGCATGACGAGCACGACACTTCGAGGAGCATGCCCGTGAGC
TGAGCAACGACACGATTGCGATATCAAGGAGCACGTATTCCCACTGACGA
CACGACTCCACCCCGAGGTGCATTCGATCGAGAGGTACAGCAGCAGTTGC
AGCAGGAGATGCGAATGCGGACTCGAACAGTTTCCGGGCGGCTTGAAGAT
ACCGAGAGCTCGCTACCAATGCC
FMO14051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43164-RC | 2338 | CG43164-RC | 556..1669 | 10..1113 | 5135 | 98.1 | Plus |
| CG43164-RE | 2012 | CG43164-RE | 233..1343 | 10..1113 | 5080 | 97.8 | Plus |
| CG43164-RD | 1962 | CG43164-RD | 233..813 | 10..590 | 2905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17507443..17507936 | 590..1075 | 1950 | 97.2 | Plus |
| 2R | 25286936 | 2R | 17505634..17506011 | 60..437 | 1890 | 100 | Plus |
| 2R | 25286936 | 2R | 17506154..17506310 | 434..590 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 17502909..17502962 | 10..63 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:06:20 has no hits.
FMO14051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:10 Download gff for
FMO14051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43164-RC | 549..1632 | 3..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:29 Download gff for
FMO14051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43164-RC | 549..1632 | 3..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:29 Download gff for
FMO14051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17502902..17502960 | 3..61 | 93 | -> | Plus |
| 2R | 17505636..17506011 | 62..437 | 100 | -> | Plus |
| 2R | 17506158..17506310 | 438..590 | 100 | -> | Plus |
| 2R | 17507444..17507939 | 591..1079 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:10 Download gff for
FMO14051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13390407..13390465 | 3..61 | 93 | -> | Plus |
| arm_2R | 13393141..13393516 | 62..437 | 100 | -> | Plus |
| arm_2R | 13393663..13393815 | 438..590 | 100 | -> | Plus |
| arm_2R | 13394949..13395444 | 591..1079 | 97 | | Plus |
