FMO14052.5prime Sequence
309 bp (309 high quality bases) assembled on 2014-01-10
> FMO14052.5prime
TCAGTCGACATGAAAAGCTATCTGCTGCTGGGCATATTATTACTATATTA
TCTGTGCATTGATGGACGGAGTGCTGAGATCAAAGAGGAAAGCGACAATC
CGAGCACAAATATACTTAGCACAACGCTTTCGAAAATTTCTCTGCAGAAC
ATAACCCGTCTCAATAGATCAAGTTTGGGTGGACGCGTACAAACTGATCA
CTTGGGAAGAAATCGGATTTACCATCGGAGAAGAGTTCAAACTAGACGTC
GAAGAACGAACAAAAATAAGCCCAAACATAAACATTCTCTAGCAAGCTTT
CTAGACCAT
FMO14052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43448-RA | 529 | CG43448-RA | 6..296 | 1..291 | 1425 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30237327..30237472 | 291..146 | 730 | 100 | Minus |
3R | 32079331 | 3R | 30237642..30237729 | 88..1 | 410 | 97.7 | Minus |
3R | 32079331 | 3R | 30237528..30237589 | 147..86 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:06:24 has no hits.
FMO14052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:12 Download gff for
FMO14052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43448-RA | 6..296 | 1..291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:31 Download gff for
FMO14052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43448-RA | 6..296 | 1..291 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:31 Download gff for
FMO14052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30237327..30237470 | 148..291 | 100 | <- | Minus |
3R | 30237528..30237587 | 88..147 | 100 | <- | Minus |
3R | 30237643..30237729 | 1..87 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:12 Download gff for
FMO14052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26063049..26063192 | 148..291 | 100 | <- | Minus |
arm_3R | 26063250..26063309 | 88..147 | 100 | <- | Minus |
arm_3R | 26063365..26063451 | 1..87 | 97 | | Minus |