Clone FMO14052 Report

Search the DGRC for FMO14052

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:140
Well:52
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG43448-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO14052.5prime Sequence

309 bp (309 high quality bases) assembled on 2014-01-10

> FMO14052.5prime
TCAGTCGACATGAAAAGCTATCTGCTGCTGGGCATATTATTACTATATTA
TCTGTGCATTGATGGACGGAGTGCTGAGATCAAAGAGGAAAGCGACAATC
CGAGCACAAATATACTTAGCACAACGCTTTCGAAAATTTCTCTGCAGAAC
ATAACCCGTCTCAATAGATCAAGTTTGGGTGGACGCGTACAAACTGATCA
CTTGGGAAGAAATCGGATTTACCATCGGAGAAGAGTTCAAACTAGACGTC
GAAGAACGAACAAAAATAAGCCCAAACATAAACATTCTCTAGCAAGCTTT
CTAGACCAT

FMO14052.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG43448-RA 529 CG43448-RA 6..296 1..291 1425 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30237327..30237472 291..146 730 100 Minus
3R 32079331 3R 30237642..30237729 88..1 410 97.7 Minus
3R 32079331 3R 30237528..30237589 147..86 310 100 Minus
Blast to na_te.dros performed on 2014-11-29 00:06:24 has no hits.

FMO14052.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:12 Download gff for FMO14052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43448-RA 6..296 1..291 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:31 Download gff for FMO14052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43448-RA 6..296 1..291 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:31 Download gff for FMO14052.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30237327..30237470 148..291 100 <- Minus
3R 30237528..30237587 88..147 100 <- Minus
3R 30237643..30237729 1..87 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:12 Download gff for FMO14052.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26063049..26063192 148..291 100 <- Minus
arm_3R 26063250..26063309 88..147 100 <- Minus
arm_3R 26063365..26063451 1..87 97   Minus