FMO14061.5prime Sequence
411 bp (411 high quality bases) assembled on 2014-01-10
> FMO14061.5prime
TCAGTCGACATGGGGCGGTTGCTGTTTGTTCTTCTGATTTGTTCCCCAAT
ACTGTCAATTAAATTCCAAGCAAATGCAGAGGATAACTCAACAAAGAATG
GCTTAGATCGAAACAGAGAAGGAGGAGGTCATAAGGCGAATGTACCAGAT
GTTTCAAGGTTTCAAAGATCATGTTCAACTCAAGAATGTAAGGAAAAGGA
ATTCAATGATATCCTCGACTCCATTCTGAGCTCGGAAACAACTACGGAGC
CTGAACGGGAAGAGGCTCCACCGAGGAATGTTCCACAGAGACCAAATCGA
CCCTACATGGTTCGACCCAGCAGTAACGGGCACTTTCTTCATGACATTGT
AACTTGGGTTGAAAGAACAAAGAGGGCAATATTTGGATTTGGAGCAAGCT
TTCTAGACCAT
FMO14061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43254-RA | 479 | CG43254-RA | 25..408 | 10..393 | 1920 | 100 | Plus |
| CG43254-RB | 491 | CG43254-RB | 25..420 | 10..393 | 1790 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7739036..7739246 | 393..183 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 7739424..7739539 | 125..10 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 7739296..7739357 | 184..123 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:06:44 has no hits.
FMO14061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:21 Download gff for
FMO14061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43254-RA | 18..415 | 1..402 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:42 Download gff for
FMO14061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43254-RA | 18..415 | 1..402 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:42 Download gff for
FMO14061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7739028..7739244 | 185..402 | 98 | <- | Minus |
| 3R | 7739296..7739355 | 125..184 | 100 | <- | Minus |
| 3R | 7739425..7739546 | 1..124 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:21 Download gff for
FMO14061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3564750..3564966 | 185..402 | 98 | <- | Minus |
| arm_3R | 3565018..3565077 | 125..184 | 100 | <- | Minus |
| arm_3R | 3565147..3565268 | 1..124 | 96 | | Minus |
