FMO14066.5prime Sequence
1144 bp (1027 high quality bases) assembled on 2014-01-10
> FMO14066.5prime
TCAGTCGACATGAAAACACCAAAAGCGAAAGAATCAGAAAAGGCTGAATT
AAAGCCGATTAAAAAAGAGCCAGGCGTCGTGGAGGATGGTAAAGTGACAA
AGAAATCAAAGACGAAGCCCAAAAAGAAGACGGTTAAAGTGCCAAAAGAT
GAAGTAAAGGCCGCTGTCCAGGAAAGTCCCAAAAAATTGTCCGCCAAAGA
CCTGGCCAAGATCGAAAAAAAGAAGGCCAAGAAGCAGGCACAGAAGCTGA
AGAAGCAGCAAAACAAACTGGCGCCCAAGGAGATCAAAACGGAACCAGAA
GCGCAGGTTAAAGTCGAAAGTAAGGCCACCAAAAAGGAAAAAGTGGAGAA
GGAACCAACGACTGCTCCAAATGAAAAACCAAAAGGAAAAGTGTCTAAAA
AAGCCAAAGCCAATGCCAATAACAAGGACGAAGAAGGAGTTAAGCGGATC
CGCAATCCTGCAGAAGAGGCGTCCACCGTTTTCGTGGGGAATTTGCCAAT
CAACACCAAACGTGTACAGCTGGTGAAATTGTTCCAGCCATATGGGTTGG
TTCAATCCATCCGGCTGCGCACCGCCGGTGGTAAGCAGCTTTTCAAGCAC
AAACAGCGCAAGGTAGCCGGCTCCCTGAACGCCTACGTGGTGCTCGAGAA
ACCCGAGATTGCCCAGCAAGCGCTGGCTCTTAATGGCTCCGAGTTCAAGG
AAAATCACCTGCGGGTGACTCCCGCGTCTATGGCGGAGAAATTCGGCCAG
GCAAAGGATAAGCAGCCCAGTGACAAGGATGCCAAGCGAACCATTTTCGT
TGGCAGCCTAAAGTACTCGGGCCACCGAGGAGCAGCTGCGAGAGATCTTC
TCCAGTTGCGGCGAAATAGACTACATACGCTGCCTACAGGATGTCGACAA
GGGCTGCAAAGGAGTAGCATACGTCTGTTTCCCAAAAGCCCGATGCTGTG
GGACTAGCTCTGAACTTATCAGACGCTTCTAGATGATAGGCCTATCAACG
TGGAGCGCTATCAAGTCAAAAAACTGGGTGCTAGCAGTGGCGCGAATGCT
GCGCCGCCCTCACTGCTTCGAACGTCCTCCAAGACCAAAGCTAAAACTGA
AATCTGCGGGGCTAAATAAGGCTAACAAAGAAACGCCAGTAACG
FMO14066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12288-RA | 1562 | CG12288-RA | 68..1173 | 10..1110 | 5085 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16901728..16902151 | 433..10 | 2120 | 100 | Minus |
| 2L | 23513712 | 2L | 16901281..16901666 | 817..432 | 1930 | 100 | Minus |
| 2L | 23513712 | 2L | 16901008..16901220 | 1031..820 | 875 | 97.2 | Minus |
Blast to na_te.dros performed 2014-11-29 00:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1102..1161 | 410..467 | 115 | 68.3 | Plus |
FMO14066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:30 Download gff for
FMO14066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12288-RA | 63..1173 | 2..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:51 Download gff for
FMO14066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12288-RA | 63..1173 | 2..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:51 Download gff for
FMO14066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16900925..16901221 | 818..1109 | 92 | <- | Minus |
| 2L | 16901281..16901664 | 434..817 | 100 | <- | Minus |
| 2L | 16901728..16902156 | 2..433 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:30 Download gff for
FMO14066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16900925..16901221 | 818..1109 | 92 | <- | Minus |
| arm_2L | 16901281..16901664 | 434..817 | 100 | <- | Minus |
| arm_2L | 16901728..16902156 | 2..433 | 99 | | Minus |
