FMO14068.5prime Sequence
1065 bp (949 high quality bases) assembled on 2014-01-10
> FMO14068.5prime
TCAGTCGACATGGCTCAAGTTCAGCTCAACGCAGGAAATGGGCAAGCCCC
AAGCAACGGAAATAATGTCGAGGATAATGAACCCTATCAAATAAGTGACG
ATGATTTGGATGACCTGGATGATGATTGCTTGCTCGAGGAGGCAGATACC
TCAGGGGCAGGCAATAATGTGGGACGTGGTCCGTACGAGCGTGCTTGGAC
CACGGAGGCCACCAGAGCATTGATTCACATACGCGGTCCCATGGAGGGTA
GCTTTACAGAGGGCAGACAAAAACGGACTGCTCTTTGGCTGCACTGCACC
CGGCAACTACAGCGACTGGGATTTCGCTACTCCGCCGCAAAGGTGCAGAA
GAAGTGGCATAACATCCTCATCACCTACAACAAGAATCTGAACAAAAAAT
ACGTATCCGGCTATGTGCACTGGGAGTTCTTCGAGGAGATGTTCAAGTAT
CTGCAGGGCAAGAAGGCCGACTTTGATATGCAGTTGCCACAACAGACCTC
AAATGCGCCACAAGCTCCACATTCTGCTAATGGGCAAAACCCGAATCCGG
GTATTCCCCAGCAACCTTTACAGCTTCAACCTACTCCGGTGAGCCTAAAG
CCGGGAACACCCCAAATGCAGGTGCAACTTCCACCCCAGACTGCGGCCAA
GGACAGCCAGCCGTATATTACACCTGTGGATCAGGTCCTGCTGCAGGCCC
AGATGAATCTGGACAGCAAGTCCAACGATGAGTTCGATGAGGATAGCAAC
AGCATGTCTGAGTAGTACGTCAACCCAAGATGGAGTACGATGGCGATCAA
GTTGCGGAGGCGGAACGTACAAACGATAGCAGCCAACATCTGGAAGTTAA
TGCAAGCTCTACGATCTGCACGACCCATGGGCTCGCACCAAGCTTCTGCA
TCCCCGATGACATCTGTGAGACTACTTTGAAAGAAACTGCAGTGGAGCGG
GAGAAGATGAGCTACACGAGTTGCACGGCGACAGTGCAATCCAAAAATTT
CACTGGTGCAGCAGGACGGATTGAACCATGGATCGATGTCATCAAAGCTT
GACGGCACGCTGCAA
FMO14068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13148-RD | 1303 | CG13148-RD | 99..1178 | 10..1065 | 4565 | 96.2 | Plus |
| CG13148-RC | 1494 | CG13148-RC | 290..1369 | 10..1065 | 4565 | 96.2 | Plus |
| CG13148-RA | 1603 | CG13148-RA | 399..1478 | 10..1065 | 4565 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12687836..12688492 | 264..916 | 2995 | 98.5 | Plus |
| 2R | 25286936 | 2R | 12687597..12687780 | 83..266 | 875 | 98.4 | Plus |
| 2R | 25286936 | 2R | 12687007..12687079 | 10..82 | 350 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:07:04 has no hits.
FMO14068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:35 Download gff for
FMO14068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13148-RA | 391..1449 | 1..1038 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:54 Download gff for
FMO14068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13148-RA | 391..1449 | 1..1038 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:54 Download gff for
FMO14068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12686999..12687079 | 1..82 | 93 | -> | Plus |
| 2R | 12687597..12687780 | 83..266 | 98 | -> | Plus |
| 2R | 12687839..12688609 | 267..1018 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:35 Download gff for
FMO14068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8574504..8574584 | 1..82 | 93 | -> | Plus |
| arm_2R | 8575102..8575285 | 83..266 | 98 | -> | Plus |
| arm_2R | 8575344..8576114 | 267..1018 | 96 | -> | Plus |
