FMO14072.5prime Sequence
1063 bp (969 high quality bases) assembled on 2014-01-10
> FMO14072.5prime
TCAGTCGACATGCGATTGGTGGAGTGCTTTATTCCCGCTTTTTGTGGGCT
CTTTGCTGGCTCCTGGGCGGACCACTATGGACGCAAGCCTCTTCTCATGT
GCTCTTTTCTAGGCTACGGCCTTCAGTATCTCATTTCAGCTGCGATTGCC
TACTGTGCCATGTACACCCAAGGTCTGGTCAGTCCCTGGTGGTATGTGCT
ATCCATCGTACCGCTCTCTTGCTTGGGAAGCAGTGTGACCTATTCCGTGG
CTGCCGTCTGTTTTATTGCCGATGTCTCCGGCGGAAAAGTTCGATCTTAC
AGGATGATTGCCTATGAACTGGCCATATATGTGGGCCTACTCCTTGGTAG
CCTTGGTTCTGGTTATGCATACGAGGCCACGGACGCCTACATTGTGTTCA
GCATATCTGCAGTTTGCATTTTCACGGCTCTATTTCTGATGGCACTCCTA
CTACCGGAGAGTTTGCCCGCCAGAAATAGGACACTATCAACACCGACGAC
TGACACCAGTGTGGTTTCCATGCTGAAGAGTTTGTGGAGCACCTGCTCGA
AGCCTCGTGAGCACCAGAATCGCTTCATGCTCACTACCATCATGGTAGTA
CTCCTCCTCACCGCCTTTGTATCGGACGGCAGCAACTCTGTGTTCTATAA
GTTTATGAGGATAAAGTTCCATTGGACCGTAAAGCAGTTTACTGAGTACG
AGACCGTTGGCATTCTTGTACCCGCAGTGGCTGGTTCACGTGGAGTTCTC
TTTATTTGGTCGCTCCGCAAGTGCACCAATTCGGCGATTCTGTGGCTGGC
ACTGGTTTCCCTGCTGAGCACTGCTCCAGCAGCCTGATGAATGGCTTCGC
CTTGAGAGCTGCAGATATACGTGGCTATTGGCTGGGCGTTTCAGTCGCTT
GTGAACCCATGTGCCGCACCATGATCACCAATTGCTGCGCTGATGACGGG
CAAATCTTTGCCCTGCTTGGGGTCTTCAGACATTTACCCCTCATATCCTC
CACCTGTACGTTGGCATTCACCGGTAACCTGGAACCTGGAACGGGAATTT
CACAGGTTACGCC
FMO14072.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8046-RB | 2325 | CG8046-RB | 469..1489 | 10..1013 | 4570 | 97.6 | Plus |
| CG8046-RA | 1878 | CG8046-RA | 411..1431 | 10..1013 | 4570 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9163703..9164027 | 625..301 | 1625 | 100 | Minus |
| 2R | 25286936 | 2R | 9164082..9164274 | 303..111 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 9163329..9163475 | 771..625 | 720 | 99.3 | Minus |
| 2R | 25286936 | 2R | 9163092..9163262 | 933..770 | 510 | 94.7 | Minus |
| 2R | 25286936 | 2R | 9164328..9164431 | 113..10 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:06:41 has no hits.
FMO14072.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:19 Download gff for
FMO14072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8046-RA | 409..1442 | 6..1022 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:41 Download gff for
FMO14072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8046-RA | 409..1442 | 6..1022 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:41 Download gff for
FMO14072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9163071..9163260 | 772..949 | 93 | <- | Minus |
| 2R | 9163329..9163474 | 626..771 | 99 | <- | Minus |
| 2R | 9163703..9164025 | 303..625 | 100 | <- | Minus |
| 2R | 9164083..9164272 | 113..302 | 100 | <- | Minus |
| 2R | 9164329..9164433 | 6..112 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:19 Download gff for
FMO14072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5050576..5050765 | 772..949 | 93 | <- | Minus |
| arm_2R | 5050834..5050979 | 626..771 | 99 | <- | Minus |
| arm_2R | 5051208..5051530 | 303..625 | 100 | <- | Minus |
| arm_2R | 5051588..5051777 | 113..302 | 100 | <- | Minus |
| arm_2R | 5051834..5051938 | 6..112 | 97 | | Minus |
