FMO14079.5prime Sequence
1045 bp (963 high quality bases) assembled on 2014-01-10
> FMO14079.5prime
TCAGTCGACATGATGAAAGCCACAGCGTGGTTTTGTCCGGTGTTATTAAC
TTTACTGTGTGCCACAAGGCTCGTCTGCACGGCCCAAAGAGGAGCAGTTG
GAGCAGGAGGAGCTGCAGGAGGATCGGGAGCGGCAGCGGGTGGAGCGGAG
GTCGGCGGAAGCGGCCGCACAAACGGATATCCTCTGGACTACCCGGATGG
AACACGGAACTCACAGGATGACTTTCTGCTGGCCAAGAGGAACAAACCGT
CGCTGTCCATTGTCAATCCGCTGGATGTGCTGCGCCAGCGGCTGCTCCTG
GAAATCGCACGCAGGCAAATGAAGGAGAACTCCCGCCAGGTCGAACTGAA
TCGCGCCATCCTGAAGAACGTGGGCAAGAGGGTCGTGCTGCGAGGAGGAG
GAGGAGGCGGAGGATCGGGAGCAGGAGGATTGGCTCCCAAGGTGAGCAGG
CGCTACCGCCAGCAGTGGCCAGTGGAGCGGGAACTGGAGCGGGAAAGGCA
GAGGGAGAGGGAAAGGGAAAGGGATGCAGTTCGTGAGGAGCAGCTGGACC
GTCAACAGCTGCTGCCGTGGAAGCATTTCCCCAGCCAACTGTGGAGCTAC
GGATGGGCCCTGTCGCCGTACAAGGAGTCGTCACAGTTACAGTTTGCGGA
CTCCCAGCAATCAGCATCGACTGGACCACAATCCCAGGCACTCCCAAAGC
AGTTGCAGTTGCTCAGCTATGCGAAGAAACCACTGGACGTGGCCGGAATG
AGTCTGGCCAGGCATCGGGTCAGCGGAAATGAAGCCAACGAAACGAATCA
TGAGAACGACGATGGCAATGGGGCCAGTAAAACCCGGCGAGATATGTGGA
TGACGGCGACATGAGGCGAGGATAGCTACATGACGTGGGACAGATGTGTG
GACTCGGCCTGGGATGGGTGTGGATTGGGTCTGGACGGTTCGAGGTGCTG
GAGACAGCCTACTGGTCAATGAAGACCAACGAGTGGTGGTGGTATATGCA
ATGAACGGCGGACCTGATCTTCCCTATCGCTTTTCATCAAGTCGA
FMO14079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh44-RC | 2372 | CG8348-RC | 319..1362 | 10..1033 | 4505 | 96.7 | Plus |
| Dh44-RA | 1412 | CG8348-RA | 32..1075 | 10..1033 | 4505 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9648979..9649606 | 336..953 | 2625 | 98.2 | Plus |
| 3R | 32079331 | 3R | 9643492..9643699 | 10..217 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 9647017..9647144 | 215..342 | 610 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:07:44 has no hits.
FMO14079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:51 Download gff for
FMO14079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh44-RA | 27..1000 | 1..965 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:00:10 Download gff for
FMO14079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh44-RA | 27..1000 | 1..965 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:00:10 Download gff for
FMO14079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9643490..9643698 | 7..216 | 99 | -> | Plus |
| 3R | 9647019..9647141 | 217..339 | 98 | -> | Plus |
| 3R | 9648983..9649621 | 340..965 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:51 Download gff for
FMO14079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5469212..5469420 | 7..216 | 99 | -> | Plus |
| arm_3R | 5472741..5472863 | 217..339 | 98 | -> | Plus |
| arm_3R | 5474705..5475343 | 340..965 | 97 | | Plus |
