FMO14083.5prime Sequence
1118 bp (1016 high quality bases) assembled on 2014-01-10
> FMO14083.5prime
TCAGTCGACATGAAGTGCGTTTTCCTGATACTGGCTGCACTTGGATTAAG
TTTTGCGGGGGAAGGTAGCACCTATGACCATTTTCGCTTGCCAACGGCTC
TTCGACCACAAAGTTACGATGTTCGCATCCTGACACAATTGGAAAATCCG
GACGATTTTCACTTCAACGGAACTGTGAAAATTCAAATAGAAGTTTTGCA
AAACACACACAATATAACTTTGCACTCAAAGGATCTGACCATCGATGATA
CGGAAATCACTCTCAGCCAAATTGGCGGAGAAGAGACAACGGAGAACTGC
ATAACGTCTACGGCAGTGAATCCCACACACGACTTCTACATTCTCAACAC
GTGTAAGGAGCTATTGGCTGGACAATTTTATGAGCTGAGTTTGCCCTTTT
CGGCCAAGTTACAAGATCAACTGGCGGGCTACTACCGAAGTTCCTATGTC
AATACAGTGGCCAATGAAACGAGATGGATCTCCGTTACTCAGTTTGAGCC
AGCTGCGGCTCGACTGGCATTTCCCTGCTTCGATGAACCTGGCTACAAGG
CATCCTTTGCCATCACCTTGGGTTATCACAAGAAGTACACCGGTCTCAGC
AACATGCCCGTGAATGAAACAAGGCCACATGAATCCATTCCGGATTATGT
ATGGACCTCGTTCGAGGAATCATTGCCGATGTCCACCTATCTGGTTGCCT
ATTCCCTAAATGATTTCTCCCACAAACCATCTACTTTACCCAATGGAACT
CTTTTTCGCACCTGGGCCAGGCCAAATGCGATCGATCAGTGTGATTATGC
CGCGGAGCTTGGACCCAAAGTACTCAAATACTACGAGGAGTTATTCGGCA
TCAGTTTCCGCTTCCCAAGGTGGATCAGATCGCTGTGCCGGATTTTAGTG
CGGGTGCCATGGAGAACTGGGGTCTGGTTACCTTTGCGGAAGAGCACCCT
TCTGTATTCCCCGGAGTACTCCTCCGCAGAAGCCAAGCAAGAAGACTGCG
AATATAGGCTCATGATTGGCCACCCATGTATGGCCACCTGTCACGATGAT
GGGTGGACGGACCTTGGCCTGAACAAGGATTGCCACTTTATGTGTGCAGT
TTGGTTGTGGAAGAACAT
FMO14083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11951-RB | 2707 | CG11951-RB | 142..1250 | 10..1111 | 5005 | 97.5 | Plus |
| CG11951-RA | 2628 | CG11951-RA | 142..1250 | 10..1111 | 5005 | 97.5 | Plus |
| SP1029-RE | 2981 | CG11956-RE | 286..999 | 221..933 | 920 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29237665..29238128 | 473..10 | 2320 | 100 | Minus |
| 3R | 32079331 | 3R | 29237007..29237383 | 1007..630 | 1670 | 97.9 | Minus |
| 3R | 32079331 | 3R | 29237447..29237604 | 629..472 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 29242795..29243064 | 928..660 | 655 | 83.7 | Minus |
| 3R | 32079331 | 3R | 29247337..29247611 | 933..660 | 545 | 80.7 | Minus |
| 3R | 32079331 | 3R | 29239510..29239837 | 467..140 | 395 | 74.7 | Minus |
| 3R | 32079331 | 3R | 29247703..29247860 | 629..472 | 250 | 77.2 | Minus |
| 3R | 32079331 | 3R | 29243158..29243279 | 629..508 | 235 | 79.5 | Minus |
| 3R | 32079331 | 3R | 29248027..29248174 | 368..221 | 230 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:07:09 has no hits.
FMO14083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:39 Download gff for
FMO14083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11951-RA | 132..1228 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:57 Download gff for
FMO14083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11951-RA | 132..1228 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:57 Download gff for
FMO14083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29236917..29237383 | 630..1088 | 95 | <- | Minus |
| 3R | 29237447..29237602 | 474..629 | 100 | <- | Minus |
| 3R | 29237665..29238133 | 1..473 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:39 Download gff for
FMO14083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25062639..25063105 | 630..1088 | 95 | <- | Minus |
| arm_3R | 25063169..25063324 | 474..629 | 100 | <- | Minus |
| arm_3R | 25063387..25063855 | 1..473 | 98 | | Minus |
