FMO14087.5prime Sequence
1025 bp (1001 high quality bases) assembled on 2014-01-10
> FMO14087.5prime
TCAGTCGACATGCCAGTTCTGGAAGTGAGCATTTACACCCTGCTGAAGAT
GGCGTTCATTTGGCAGCTGATCTCGGCGGCCATCTACCTCGTAGGACTGC
TCACCATCGGTGTGTTTCTGTACGACAACCTGAAGTCATTGGTCAGCATA
ATCAAGGCCGTCCTGGAACCCTACTTCCAGCCCCACTTGCCAAGGACATT
GGTGGATAAGTTCGGACAGTGGGCAGTGGTGACTGGAGCCACCGATGGCA
TTGGCAAGGAGTACGCCAGGGAGCTGGCTCGCCAGGGTATCAACCTGGTG
CTCATCTCGCGGACGAAGGAGAAGCTCATTGCGGTTACCAATGAGATTGA
GAGCCAGTACAAAGTGAAGACCAAGTGGATTGCAGCGGATTTCGCCAAGG
GACGTGAGGTGTACGATCAGATCGAAAAGGAACTGGCGGGCATAGACGTT
GGCATTTTGGTCAACAACGTGGGCATGATGTATGAGCACCCCGAGAGTCT
GGACCTGGTCTCAGAGGATCTTCTTTGGAACCTTCTTACCGTCAACATGG
GATCGGTTACCATGCTCACCCGCAAGATCCTGCCCCAGATGATTGGTCGC
CGAAAGGGCGCCATTGTCAATCTGGGATCCTCCTCTGAGCTCCAGCCACT
GCCCAACATGACCGTCTATGCTGCGAGCAAGAAGTTTGTCACCTACTTCT
CCAAGGCCCTGGAACTGGAGGTGGCGGAGCACAATATCCACGTGCAGCTG
GTGATGCCCAACTTTGTGGTGACCAAAATGAATGCCTACACCGATCGGGT
AATGCAGGGAGGTCTGTTTTTCCCGAACGCATACACTTTTGCCCGGTCCG
CCGTATTTACACTGGGAAAACGAGCGAGACCAACGGTTTCTGGACCATGG
CATTCAGTATGCCATTATGAAATGGCTCCCCTGCCGATCCGCACATACTG
GGACACCAACTGTCAACGACTGAGATCGAGCCTCGAGCAAGCAAAGAACT
GAGCTACTGCAGCTTTCTAGACCAT
FMO14087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13284-RC | 1676 | CG13284-RC | 586..1580 | 5..990 | 4745 | 99 | Plus |
| CG13284-RD | 2178 | CG13284-RD | 233..1220 | 12..990 | 4725 | 99.1 | Plus |
| CG13284-RB | 1316 | CG13284-RB | 233..1220 | 12..990 | 4725 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16843513..16843962 | 907..460 | 2150 | 99.6 | Minus |
| 2L | 23513712 | 2L | 16846751..16846965 | 226..12 | 1075 | 100 | Minus |
| 2L | 23513712 | 2L | 16849410..16849778 | 893..526 | 775 | 81.3 | Minus |
| 2L | 23513712 | 2L | 16853968..16854336 | 893..526 | 775 | 81.3 | Minus |
| 2L | 23513712 | 2L | 16844679..16844803 | 349..225 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 16844509..16844620 | 460..349 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 16850158..16850282 | 349..225 | 295 | 82.4 | Minus |
| 2L | 23513712 | 2L | 16854716..16854840 | 349..225 | 295 | 82.4 | Minus |
| 2L | 23513712 | 2L | 16849984..16850093 | 460..351 | 250 | 81.8 | Minus |
| 2L | 23513712 | 2L | 16854542..16854651 | 460..351 | 250 | 81.8 | Minus |
| 2L | 23513712 | 2L | 16843337..16843397 | 963..905 | 205 | 96.7 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:08:36 has no hits.
FMO14087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:58 Download gff for
FMO14087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13284-RC | 582..1587 | 1..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:00:19 Download gff for
FMO14087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13284-RC | 582..1587 | 1..995 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:00:19 Download gff for
FMO14087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16843513..16843961 | 461..907 | 99 | <- | Minus |
| 2L | 16844509..16844619 | 350..460 | 100 | <- | Minus |
| 2L | 16844679..16844801 | 227..349 | 100 | <- | Minus |
| 2L | 16846751..16846971 | 1..226 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:58 Download gff for
FMO14087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16843513..16843961 | 461..907 | 99 | <- | Minus |
| arm_2L | 16844509..16844619 | 350..460 | 100 | <- | Minus |
| arm_2L | 16844679..16844801 | 227..349 | 100 | <- | Minus |
| arm_2L | 16846751..16846971 | 1..226 | 97 | | Minus |
