FMO14093.5prime Sequence
1108 bp (999 high quality bases) assembled on 2014-01-10
> FMO14093.5prime
TCAGTCGACATGTGCAGCATCAGTCAATTGCAGTGGATACACAATCGCTT
ATCGATTGGAGCCCAAAACAAAGAGCCCATGGACGTGCGCATCGACATGC
CGTGGGGTTATGTGGTGGGCAAGTGGTACGGCAATCGGCAGGTACGACCC
ATCCTGGCGCTGCATGGCTGGCTGGACAACCTGGGCACGTGGGACAAATT
GCTGCCCCTGCTACCGAAGCACCTGGGAGTGCTGTGCATCGACCTGCCCG
GCCACGGATACTCCTCGAAGCTGCCCGAGGGGATTGCCTACCACTTCGTG
GACTACCTGTGCGTGATCCTGCGCGTAATGGAGGAGTACCGCTGGCAGAA
GGTGTCCCTGATGGCCCACTCAATGAGCGCCATGCTGTGCTTCGTATTCG
CTTCGCTGTACCCACATCGCACCGACATGTTGGTCAGCATAGATATAGTG
AAGACCCGCTATAGGAAGCCCCCCTCGCAGATCGACTATCTGCGCAAGAA
CATCGAGGGCTACATTGTGGAGGACGAGCGATTTGCGAATTCCAAGCGCC
AGGAGCCGCCGGCCTATACCTACACAGAGATGGAGCAGGTCCTGTACAAA
GGCACCGACTACTCGGTGGAGCTGGAGAACTGCCGCCACATCCTGGAGCG
CAACATCAGCCGTTCCACCAAGTTCCCGGCCAAGTTCTTCTTCTCGCGCG
ACGGTCGCTGCAAGTACTACACGGAGTTCCATACGAGTCCTCCCTTCGCC
GCTGAACTGGCCAGGACCATCAAGAATGTGCCCTACTGCGTGATCAAGGG
CTCCGAGTCGAACTACATAGACGAGCAGAGCGACGAGGTGATTGGCATCC
TCAGGAGACACTCGCACTTCGAGCTCACGAAGTGCAGGCACCCACCACGT
TCACTCAACATGCGCAGGTGTGCGGCGTCATATCCCTTCATTCTGCACCA
CCGCCCACCGCATCTGAGACTGGAACGGTGGACGGGACGGATGAAACGCT
GCCCGAGTCGTCAGGATTCAAGTTGGCCGTGGAGGATCAGAATGTCAGGC
GGAGGAAGAAAGGCAACTTACAGCTTTCTTGAACATCGTTTGGCCGCGGC
CAGCAATG
FMO14093.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RC | 1714 | CG5707-RC | 400..1469 | 9..1059 | 4805 | 97.8 | Plus |
| CG5707-RB | 1477 | CG5707-RB | 163..1232 | 9..1059 | 4805 | 97.8 | Plus |
| CG5707-RA | 1533 | CG5707-RA | 283..1288 | 73..1059 | 4485 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2189405..2190410 | 1059..73 | 4120 | 96.5 | Minus |
| 3L | 28110227 | 3L | 2191141..2191205 | 73..9 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:09:15 has no hits.
FMO14093.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:24:06 Download gff for
FMO14093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RB | 163..1243 | 9..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:00:37 Download gff for
FMO14093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RB | 163..1243 | 9..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:00:37 Download gff for
FMO14093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2189394..2190410 | 73..1067 | 97 | <- | Minus |
| 3L | 2191142..2191205 | 9..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:24:06 Download gff for
FMO14093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2189394..2190410 | 73..1067 | 97 | <- | Minus |
| arm_3L | 2191142..2191205 | 9..72 | 100 | | Minus |
