FMO14095.5prime Sequence
543 bp (543 high quality bases) assembled on 2014-01-10
> FMO14095.5prime
TCAGTCGACATGGGTTCCGACCAAACAGGTATCGATTTTAAAATTAGAAC
AATTGAATTAGATAACAAGAAGATTAAGCTGCAGATATGGGACACTGCCG
GCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTACAGAGGTGCCATG
GGCATCATGCTGGTATATGACATAACCCAAGAAAAGTCCTTCGAGAACAT
CAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCGCCGATGTCGAGA
AAATGCTGTTGGGAAACAAGTGCGAATTGACCGATAAGCGACAGGTTTCA
AAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCATCAAGTTCATGGA
GACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCTTCCTCACCCTAG
CCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAGGCGAACAACCCA
CCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCGGACGAAGGACAG
TTGGTTGTCCAGGTGCAGTCTGCTTGCAAGCTTTCTAGACCAT
FMO14095.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab8-RB | 1068 | CG8287-RB | 32..548 | 9..525 | 2570 | 99.8 | Plus |
| Rab8-RC | 2043 | CG8287-RC | 697..1195 | 27..525 | 2480 | 99.8 | Plus |
| Rab8-RA | 2263 | CG8287-RA | 697..1195 | 27..525 | 2480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19869101..19869308 | 296..89 | 1025 | 99.5 | Minus |
| 3L | 28110227 | 3L | 19868723..19868866 | 436..293 | 720 | 100 | Minus |
| 3L | 28110227 | 3L | 19868556..19868646 | 525..435 | 455 | 100 | Minus |
| 3L | 28110227 | 3L | 19869367..19869431 | 90..26 | 325 | 100 | Minus |
| X | 23542271 | X | 20252275..20252409 | 66..200 | 315 | 82.2 | Plus |
| 3R | 32079331 | 3R | 21114776..21114868 | 81..173 | 180 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:08:01 has no hits.
FMO14095.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:23:54 Download gff for
FMO14095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab8-RB | 32..548 | 9..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 01:00:13 Download gff for
FMO14095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab8-RB | 32..548 | 9..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 01:00:13 Download gff for
FMO14095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19868556..19868645 | 436..525 | 100 | <- | Minus |
| 3L | 19868724..19868864 | 295..435 | 100 | <- | Minus |
| 3L | 19869103..19869307 | 90..294 | 99 | <- | Minus |
| 3L | 19869368..19869428 | 29..89 | 100 | <- | Minus |
| 3L | 19869508..19869527 | 9..28 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:23:54 Download gff for
FMO14095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19861656..19861745 | 436..525 | 100 | <- | Minus |
| arm_3L | 19861824..19861964 | 295..435 | 100 | <- | Minus |
| arm_3L | 19862203..19862407 | 90..294 | 99 | <- | Minus |
| arm_3L | 19862468..19862528 | 29..89 | 100 | <- | Minus |
| arm_3L | 19862608..19862627 | 9..28 | 100 | | Minus |
