FMO14106.5prime Sequence
752 bp (752 high quality bases) assembled on 2014-07-11
> FMO14106.5prime
TCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGGCCGTGGT
GGCCCAGGCCTATGGAGATTTCAAGTCCAAGCAAGAAAGCAAGAGTTTCG
TGAGAGAGCTTCAAAGGGAGCGAGAAGAGCATCAACTAAAAGAAAAACAA
AACCTAAGCCATGAAGGTCAAGACCAAGAGTGCAAAGGCTCCCTGGCTGT
TCCTGAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGG
GCATGCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTG
GCCATGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGC
CGAGCACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGC
TGGTGGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGAT
CTGATCAATGTGCCGACTGTGGCCAAGCAGGAGTGGACCGATGGTGCCGC
CGCCCTGTCCGACGCCCTCGACCTGGAGATCAAGGTGACCAAGTCCATCC
GCAAGCTGATCCAGACCTGCGAGAACAAGCCCTACAACCACTACCACCTG
GTGGACTACCTGACCGGTGTCTATCTGGAGGAGCAGCTCCACGGACAGCG
CGAGCTCGCCGGCAAGCTGACCACTCTCAAGAAGATGATGGACACCAACG
GCGAACTGGGCGAGTTCCTGTTCGACAGACCCTGGCAAGCTTTCTAGACC
AT
FMO14106.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RG | 1246 | CG2216-RG | 107..832 | 10..734 | 3605 | 99.9 | Plus |
| Fer1HCH-RF | 981 | CG2216-RF | 71..796 | 10..734 | 3605 | 99.9 | Plus |
| Fer1HCH-RI | 1009 | CG2216-RI | 90..824 | 10..734 | 3505 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386319..30386598 | 465..186 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 30385995..30386257 | 727..465 | 1315 | 100 | Minus |
| 3R | 32079331 | 3R | 30386717..30386828 | 188..77 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 30387464..30387530 | 76..10 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:21:54 has no hits.
FMO14106.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:36:17 Download gff for
FMO14106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RF | 71..800 | 10..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:53 Download gff for
FMO14106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RF | 71..800 | 10..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:53 Download gff for
FMO14106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30385983..30386256 | 466..739 | 98 | <- | Minus |
| 3R | 30386319..30386596 | 188..465 | 100 | <- | Minus |
| 3R | 30386718..30386828 | 77..187 | 100 | <- | Minus |
| 3R | 30387464..30387530 | 10..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:36:17 Download gff for
FMO14106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26211705..26211978 | 466..739 | 98 | <- | Minus |
| arm_3R | 26212041..26212318 | 188..465 | 100 | <- | Minus |
| arm_3R | 26212440..26212550 | 77..187 | 100 | <- | Minus |
| arm_3R | 26213186..26213252 | 10..76 | 100 | | Minus |
