FMO14107.5prime Sequence
1022 bp (928 high quality bases) assembled on 2014-07-11
> FMO14107.5prime
TCAGTCGACATGGAGAACACCACAATGCTGGCTAATATTAGCCTAAATGC
AACCAGAAATGAGGAGAATATCACCTCATTCTTCACCGACGAAGAGTGGC
TGGCCATCAATGGCACTTTGCCGTGGATAGTGGGATTCTTCTTCGGCGTC
ATCGCCATCACGGGATTCTTCGGCAACCTGCTGGTCATCCTGGTGGTGGT
CTTCAACAACAACATGCGCTCCACCACCAACCTGATGATTGTCAATCTGG
CTGCCGCTGATCTGATGTTCGTAATCCTCTGCATTCCCTTCACGGCCACC
GATTACATGGTGTACTACTGGCCATATGGAAGGTTCTGGTGCCGCAGTGT
CCAGTACCTGATTGTGGTGACCGCCTTCGCCTCCATTTACACGCTGGTGC
TGATGTCCATCGATCGGTTCCTGGCGGTGGTTCATCCCATTCGCTCGCGG
ATGATGAGGACGGAGAACATTACCCTGATTGCCATCGTGACTCTGTGGAT
CGTGGTGCTGGTCGTTTCGGTGCCAGTGGCCTTCACCCACGACGTGGTGG
TGGATTACGATGCAAAGAAGAACATCACCTACGGCATGTGCACCTTCACG
ACGAACGACTTCCTTGGTCCGCGCACCTACCAGGTCACCTTCTTCATCAG
CTCCTACCTGCTGCCCCTGATGATCATCAGCGGTCTCTACATGCGCATGA
TCATGCGGCTCTGGCGCCAGGGAACCGGCGTCCGCATGTCCAAGGAGTCG
CAGCGCGGTCGCAAGCGGGTCACCCGACTCGTCGTCGTGTGGTCATCGCC
TTCGCCTCGCTCTGGCTGCCTGTCCAGCTCATCCTGCTGCTCAAGTCACT
GGATTGTCATCGAGACGAACACCCTTCACCAAGCTAGTCATCCAGGTCAC
CGCCCAGAACTTCTGGCCTACAGCAAGCTCGTGGATCAATTCGCTGCTCT
ATCGCCTTCCTCTCCGAAAATATCTCGAAGAGCCTCTCTACTAGGGCTTG
GAATCCCATGACTTGTTAGTGT
FMO14107.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R2-RB | 2077 | CG10001-RB | 756..1757 | 8..1015 | 4665 | 98.1 | Plus |
| AstA-R2-RC | 1994 | CG10001-RC | 756..1736 | 8..995 | 4615 | 98.4 | Plus |
| AstA-R2-RA | 2273 | CG10001-RA | 756..1736 | 8..995 | 4615 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28743484..28744027 | 551..8 | 2720 | 100 | Minus |
| 3R | 32079331 | 3R | 28740706..28740985 | 827..549 | 1350 | 99.6 | Minus |
| 3R | 32079331 | 3R | 28740493..28740633 | 971..825 | 410 | 93.2 | Minus |
| X | 23542271 | X | 3655852..3655904 | 386..438 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:21:57 has no hits.
FMO14107.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:36:18 Download gff for
FMO14107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AR-2-RB | 749..1727 | 1..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:56 Download gff for
FMO14107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstA-R2-RB | 749..1727 | 1..985 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:56 Download gff for
FMO14107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28740480..28740630 | 828..985 | 91 | <- | Minus |
| 3R | 28740706..28740984 | 550..827 | 99 | <- | Minus |
| 3R | 28743486..28744034 | 1..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:36:18 Download gff for
FMO14107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24566202..24566352 | 828..985 | 91 | <- | Minus |
| arm_3R | 24569208..24569756 | 1..549 | 99 | | Minus |
| arm_3R | 24566428..24566706 | 550..827 | 99 | <- | Minus |
