FMO14110.5prime Sequence
963 bp (870 high quality bases) assembled on 2014-07-11
> FMO14110.5prime
TCAGTCGACATGGTCGTGCACAAGAACTCTTTTGTTATCAAAATGGGTTC
CCTGGAGAAGCTGAAACAATTGAGACTGATACACCTGTGCATCGCGCTCA
CCTTCTTTACCAGCGGGCTGTGCATCAACTTTATCCAGCTGCTGATGCAC
GTCTTTATCAAGCCCATAGACAAGCGACTCTTCCGCAAGTTGATGTACTA
TGCCTGCTATTCGCTTTACTCCCAACTTATCTTCGTGTCCGATTGGTATG
CCGGCAGCAAGATGACTGTCTACATGGACAAGGAGGACTTCGAGAAGCAT
GCCGGCAAGGAACACGTCCTTCTGATCATGAACCATAAATACGAGATCGA
TTGGCTCAACGGCTGGATGATCTGCGAAAAGTTGGGCGTGCTGGGCAACT
GCAAGGCCTATGCGAAGAAGGCAATCCGCTACGTGCCCATCATCGGCTGG
GGCTGGTGGCTGGCCGAGTTCGTCTTCCTCAATCGAAACTTCGACCAGGA
CAAGACCATCATCACCGAACAGCTCAAGGTGGTCTTCTCCTATCCCGATC
CCACCTGGCTTTTGCTCAACGCCGAGGGCACTCGCTTCACTCCCGCCAAG
CACGAGGCATCCGTAAAATTCGCCCAGGAGAGGGGCATGACGGTGCTGAA
GCACCATTTGATCCCGCGCACCAAGGGATTCACCGCCAGCTTGGCACCCA
TCCGCGGTCTCTGTCCGGTAATCTACGACATTAATCTAGCGTACAGGCCC
ACAGATAGACCCCCGCCACATGCTGAGTTTGCTGCATGGAAAGAGCGTGA
CCGCACTGCTGATGAGCGTATTCCACTGGAACAGTTCCGGAGATGAGAAG
AGCGCCGCCCTGGCTGCAGAACCTGTTCTGGAGAAGAACAAAATCACCGA
TAGCTTCCTTGAAGACGGCCGCCTCCTTTATATCTTCCGGCGCATAGAAG
GTTCCGCTATGTG
FMO14110.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-RE | 1849 | CG4729-RE | 355..1312 | 9..956 | 4220 | 96.9 | Plus |
| CG4729-RC | 1676 | CG4729-RC | 209..1139 | 36..956 | 4085 | 96.8 | Plus |
| CG4729-RB | 1672 | CG4729-RB | 206..1135 | 37..956 | 4080 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16383333..16383866 | 757..224 | 2670 | 100 | Minus |
| 3L | 28110227 | 3L | 16383927..16384113 | 223..37 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 16379722..16380156 | 737..303 | 540 | 74.9 | Minus |
| 3L | 28110227 | 3L | 16382579..16382741 | 909..757 | 280 | 89.6 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:21:26 has no hits.
FMO14110.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-11 10:36:03 Download gff for
FMO14110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RE | 348..1282 | 1..925 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:59:37 Download gff for
FMO14110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RE | 348..1282 | 1..925 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:59:37 Download gff for
FMO14110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16383331..16383866 | 224..758 | 99 | <- | Minus |
| 3L | 16383927..16384113 | 37..223 | 100 | <- | Minus |
| 3L | 16385428..16385461 | 1..36 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-11 10:36:03 Download gff for
FMO14110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16376431..16376966 | 224..758 | 99 | <- | Minus |
| arm_3L | 16377027..16377213 | 37..223 | 100 | <- | Minus |
| arm_3L | 16378528..16378561 | 1..36 | 91 | | Minus |
